[Qpcr-commits] r117 - in pkg/QCqPCR/inst: . doc exData
noreply at r-forge.r-project.org
noreply at r-forge.r-project.org
Fri Sep 3 16:40:36 CEST 2010
Author: jperkins
Date: 2010-09-03 16:40:35 +0200 (Fri, 03 Sep 2010)
New Revision: 117
Added:
pkg/QCqPCR/inst/exData/
pkg/QCqPCR/inst/exData/example.txt
Modified:
pkg/QCqPCR/inst/doc/QCqPCR.Rnw
Log:
fixing build on R-forge
Modified: pkg/QCqPCR/inst/doc/QCqPCR.Rnw
===================================================================
--- pkg/QCqPCR/inst/doc/QCqPCR.Rnw 2010-09-01 16:54:09 UTC (rev 116)
+++ pkg/QCqPCR/inst/doc/QCqPCR.Rnw 2010-09-03 14:40:35 UTC (rev 117)
@@ -63,7 +63,7 @@
<<readTaqman, echo=TRUE, width=200, height=160, eval=TRUE>>=
library(ReadqPCR)
library(QCqPCR)
-path <- system.file("exData", package = "ReadqPCR")
+path <- system.file("exData", package = "NormqPCR")
taqman.example <- paste(path, "/example.txt", sep="")
taqmanqPCRBatch <- read.taqman(taqman.example)
@
Added: pkg/QCqPCR/inst/exData/example.txt
===================================================================
--- pkg/QCqPCR/inst/exData/example.txt (rev 0)
+++ pkg/QCqPCR/inst/exData/example.txt 2010-09-03 14:40:35 UTC (rev 117)
@@ -0,0 +1,1539 @@
+SDS 2.1RQ Results 1
+Filename Untitled 1
+Assay Type RQ Study
+EmbeddedFile john dawes card 1
+Run DateTime Mon Feb 11 13:08:29 GMT 2008
+Operator
+ThermalCycleParams
+EmbeddedFile john dawes card 2
+Run DateTime Mon Feb 11 16:11:12 GMT 2008
+Operator
+ThermalCycleParams
+
+Well PlateID Sample Detector Task Ct delta Rn delta Ct Ct Avg Ct SD Avg Delta Ct delta Ct SD Endo Ct Avg Endo Ct SD delta delta Ct RQ RQ Min RQ Max Baseline Type Baseline Start Baseline Stop Threshold Type Threshold Instrument Outlier Filename
+1 fp1 day3 v Il12a-Rn00584538_m1 Target 1 10.384224 31.55474 10.598396 20.956345 0 1 Automatic Automatic 1.0175787 201204 john dawes card 1
+2 fp1 day3 v Cebpe-Rn00567306_g1 Target 1 1.4603829 32.95445 11.998104 20.956345 0 1 Automatic Automatic 0.26428357 201204 john dawes card 1
+3 fp1 day3 v Il5-Rn01459975_m1 Target 2 3.3862786 35.65412 14.697777 20.956345 0 1 Automatic Automatic 0.36130795 201204 john dawes card 1
+4 fp1 day3 v Slit2-Rn00575268_m1 Target 10 7.233863 32.12075 11.164406 20.956345 0 1 Automatic Automatic 0.95422596 201204 john dawes card 1
+5 fp1 day3 v Ptgds-Rn00564605_m1 Target 20 3.1537497 35.066967 14.110622 20.956345 0 1 Automatic Automatic 0.37859982 201204 john dawes card 1
+6 fp1 day3 v Cxcr3-Rn00584689_m1 Target 30 7.8993907 32.440365 11.48402 20.956345 0 1 Automatic Automatic 0.89772755 201204 john dawes card 1
+7 fp1 day3 v Il2-Rn00587673_m1 Target 40 4.119868 35.223816 14.267471 20.956345 0 1 Automatic Automatic 0.7051987 201204 john dawes card 1
+8 fp1 day3 v Il8ra-Rn00570857_s1 Target 1 1.8067644 35.97655 15.020206 20.956345 0 1 Automatic Automatic 0.29705846 201204 john dawes card 1
+9 fp1 day3 v Rgs3-Rn00571037_m1 Target 28.448927 6.958167 28.448927 7.4925823 20.956345 0 1 Automatic Automatic 0.6562716 201204 john dawes card 1
+10 fp1 day3 v Alpl-Rn00564931_m1 Target 33.454952 5.840436 33.454952 12.498608 20.956345 0 1 Automatic Automatic 0.87829894 201204 john dawes card 1
+11 fp1 day3 v 18S-Hs99999901_s1 Endogenous Control 20.956345 8.958763 20.956345 20.956345 Automatic Automatic 0.8473376 201204 john dawes card 1
+12 fp1 day3 v Pdgfa-Rn00709363_m1 Target 28.445232 9.831288 28.445232 7.488888 20.956345 0 1 Automatic Automatic 1.151145 201204 john dawes card 1
+13 fp1 day3 v Mmp13-Rn01448197_m1 Target 34.915367 3.0117486 34.915367 13.9590225 20.956345 0 1 Automatic Automatic 0.4351176 201204 john dawes card 1
+14 fp1 day3 v Tnf-Rn99999017_m1 Target 31.884468 4.007871 31.884468 10.928123 20.956345 0 1 Automatic Automatic 0.6038425 201204 john dawes card 1
+15 fp1 day3 v Grb2-Rn00578230_m1 Target 33.54035 0.84868896 33.54035 12.584007 20.956345 0 1 Automatic Automatic 0.2312383 201204 john dawes card 1
+16 fp1 day3 v Il1b-Rn00580432_m1 Target 31.471775 7.0236025 31.471775 10.51543 20.956345 0 1 Automatic Automatic 0.7981445 201204 john dawes card 1
+17 fp1 day3 v Ccl9-Rn01471276_m1 Target 31.97366 3.058116 31.97366 11.017315 20.956345 0 1 Automatic Automatic 0.42461607 201204 john dawes card 1
+18 fp1 day3 v Cxcl10-Rn00594648_m1 Target 28.962765 8.499299 28.962765 8.00642 20.956345 0 1 Automatic Automatic 0.6213923 201204 john dawes card 1
+19 fp1 day3 v Runx2-Rn01512296_m1 Target 31.870592 0.5750324 31.870592 10.9142475 20.956345 0 1 Automatic Automatic 0.10030804 201204 john dawes card 1
+20 fp1 day3 v Ccr1-Rn00571950_s1 Target 29.168869 5.0156736 29.168869 8.212524 20.956345 0 1 Automatic Automatic 0.46858382 201204 john dawes card 1
+21 fp1 day3 v Cx3cr1-Rn00591798_m1 Target 28.425762 9.163347 28.425762 7.4694176 20.956345 0 1 Automatic Automatic 0.76806015 201204 john dawes card 1
+22 fp1 day3 v Ccl4-Rn00587826_m1 Target 32.115623 5.4162035 32.115623 11.159279 20.956345 0 1 Automatic Automatic 0.7759767 201204 john dawes card 1
+23 fp1 day3 v Ifng-Rn00594078_m1 Target Undetermined 0.013110876 40 19.043655 20.956345 Automatic Automatic 1.0265654 201204 john dawes card 1
+24 fp1 day3 v Gpr30-Rn00592091_s1 Target 30.363394 6.9944263 30.363394 9.407049 20.956345 0 1 Automatic Automatic 0.7717798 201204 john dawes card 1
+25 fp1 day3 v Col2a1-Rn00491926_g1 Target 29.4301 2.6695526 29.4301 8.473755 20.956345 0 1 Automatic Automatic 0.15269013 201204 john dawes card 1
+26 fp1 day3 v Cxcl2-Rn00586403_m1 Target 35.82119 2.7309127 35.82119 14.864845 20.956345 0 1 Automatic Automatic 0.6235918 201204 john dawes card 1
+27 fp1 day3 v Bdnf-Rn00560868_m1 Target Undetermined 0.036898375 40 19.043655 20.956345 Automatic Automatic 0.2 201204 john dawes card 1
+28 fp1 day3 v Il12b-Rn00575112_m1 Target 34.612846 6.558017 34.612846 13.656502 20.956345 0 1 Automatic Automatic 1.0121967 201204 john dawes card 1
+29 fp1 day3 v Il6-Rn00561420_m1 Target 34.37714 4.983359 34.37714 13.420795 20.956345 0 1 Automatic Automatic 0.7106979 201204 john dawes card 1
+30 fp1 day3 v Tnfrsf1a-Rn00565310_m1 Target 27.395575 5.869062 27.395575 6.43923 20.956345 0 1 Automatic Automatic 0.6337161 201204 john dawes card 1
+31 fp1 day3 v Il8rb-Rn00567841_m1 Target 33.796722 5.0313845 33.796722 12.840378 20.956345 0 1 Automatic Automatic 0.57857907 201204 john dawes card 1
+32 fp1 day3 v Cxcl11-Rn00788262_g1 Target 33.742622 2.8558228 33.742622 12.786278 20.956345 0 1 Automatic Automatic 0.31151986 201204 john dawes card 1
+33 fp1 day3 v Vegfa-Rn00582935_m1 Target 26.598122 8.943991 26.598122 5.641777 20.956345 0 1 Automatic Automatic 0.91666675 201204 john dawes card 1
+34 fp1 day3 v Il13-Rn00587615_m1 Target Undetermined 0.028068662 40 19.043655 20.956345 Automatic Automatic 0.7238301 201204 john dawes card 1
+35 fp1 day3 v Ccl20-Rn00570287_m1 Target Undetermined 0.014189959 40 19.043655 20.956345 Automatic Automatic 0.6032615 201204 john dawes card 1
+36 fp1 day3 v Tac1-Rn00562002_m1 Target 34.305714 3.625636 34.305714 13.349369 20.956345 0 1 Automatic Automatic 0.5766078 201204 john dawes card 1
+37 fp1 day3 v B2m-Rn00560865_m1 Target 21.664568 9.355852 21.664568 0.70822334 20.956345 0 1 Automatic Automatic 0.8998897 201204 john dawes card 1
+38 fp1 day3 v Actb-Rn00667869_m1 Endogenous Control 20.92301 19.34592 20.956345 Automatic Automatic 0.770067 201204 john dawes card 1
+39 fp1 day3 v Hif1a-Rn00577560_m1 Target 27.470108 9.018518 27.470108 6.5137634 20.956345 0 1 Automatic Automatic 1.0161575 201204 john dawes card 1
+40 fp1 day3 v Ccl17-Rn00589290_m1 Target 33.997066 0.74561536 33.997066 13.040722 20.956345 0 1 Automatic Automatic 0.12348082 201204 john dawes card 1
+41 fp1 day3 v Pten-Rn00477208_m1 Target 25.145676 8.398377 25.145676 4.189331 20.956345 0 1 Automatic Automatic 0.70178765 201204 john dawes card 1
+42 fp1 day3 v Ngfb-Rn01533872_m1 Target 32.54573 5.1865916 32.54573 11.589386 20.956345 0 1 Automatic Automatic 0.8326259 201204 john dawes card 1
+43 fp1 day3 v Il10-Rn00563409_m1 Target Undetermined 0.025092363 40 19.043655 20.956345 Automatic Automatic 0.28454646 201204 john dawes card 1
+44 fp1 day3 v Cxcl12-Rn00573260_m1 Target 25.742168 9.39166 25.742168 4.785824 20.956345 0 1 Automatic Automatic 1.0438013 201204 john dawes card 1
+45 fp1 day3 v Il1rap-Rn00492642_m1 Target 30.64161 8.0217905 30.64161 9.685265 20.956345 0 1 Automatic Automatic 1.044433 201204 john dawes card 1
+46 fp1 day3 v Stat3-Rn00562562_m1 Target 25.798025 7.128541 25.798025 4.8416805 20.956345 0 1 Automatic Automatic 0.78019255 201204 john dawes card 1
+47 fp1 day3 v Ccr5-Rn00588629_m1 Target 28.881958 9.6383505 28.881958 7.9256134 20.956345 0 1 Automatic Automatic 0.9460624 201204 john dawes card 1
+48 fp1 day3 v Cxcl1-Rn00578225_m1 Target 33.94899 3.8710043 33.94899 12.992645 20.956345 0 1 Automatic Automatic 0.6588785 201204 john dawes card 1
+49 fp1 day3 v Csf3-Rn00567344_m1 Target 34.65525 1.1834797 34.65525 13.698906 20.956345 0 1 Automatic Automatic 0.23247567 201204 john dawes card 1
+50 fp1 day3 v Il18-Rn00824548_m1 Target 28.780907 6.0607963 28.780907 7.824562 20.956345 0 1 Automatic Automatic 0.59288484 201204 john dawes card 1
+51 fp1 day3 v Ccr3-Rn00588614_m1 Target 34.95507 1.1336472 34.95507 13.998726 20.956345 0 1 Automatic Automatic 0.20174281 201204 john dawes card 1
+52 fp1 day3 v Ccr4-Rn00591783_s1 Target 37.045467 1.6716584 37.045467 16.089123 20.956345 0 1 Automatic Automatic 0.39073327 201204 john dawes card 1
+53 fp1 day3 v Ccr9-Rn00597283_m1 Target 35.600647 2.5606408 35.600647 14.644302 20.956345 0 1 Automatic Automatic 0.30018288 201204 john dawes card 1
+54 fp1 day3 v Jak2-Rn00580452_m1 Target 28.343864 7.0191317 28.343864 7.38752 20.956345 0 1 Automatic Automatic 0.8382364 201204 john dawes card 1
+55 fp1 day3 v Cmklr1-Rn00573616_s1 Target 26.502375 8.76651 26.502375 5.54603 20.956345 0 1 Automatic Automatic 0.8251539 201204 john dawes card 1
+56 fp1 day3 v Ccl2-Rn00580555_m1 Target 29.953669 2.303303 29.953669 8.997324 20.956345 0 1 Automatic Automatic 0.26797473 201204 john dawes card 1
+57 fp1 day3 v Lif-Rn00573491_g1 Target 33.94185 5.170559 33.94185 12.985504 20.956345 0 1 Automatic Automatic 1.0591687 201204 john dawes card 1
+58 fp1 day3 v Ccl22-Rn01536591_m1 Target 31.701086 4.501918 31.701086 10.744741 20.956345 0 1 Automatic Automatic 0.56238765 201204 john dawes card 1
+59 fp1 day3 v Ccl7-Rn01467286_m1 Target 28.391527 6.728354 28.391527 7.4351826 20.956345 0 1 Automatic Automatic 0.7429022 201204 john dawes card 1
+60 fp1 day3 v Ccl28-Rn00586715_m1 Target Undetermined 0.03345275 40 19.043655 20.956345 Automatic Automatic 0.06297014 201204 john dawes card 1
+61 fp1 day3 v Adipoq-Rn00595250_m1 Target 20.939062 8.143252 20.939062 -0.017282486 20.956345 0 1 Automatic Automatic 0.5794267 201204 john dawes card 1
+62 fp1 day3 v Col1a1-Rn00801649_g1 Target 19.5495 6.0197387 19.5495 -1.4068451 20.956345 0 1 Automatic Automatic 0.6879202 201204 john dawes card 1
+63 fp1 day3 v Mmp7-Rn00563467_m1 Target 34.5765 3.228917 34.5765 13.620155 20.956345 0 1 Automatic Automatic 0.4870306 201204 john dawes card 1
+64 fp1 day3 v Ptgs2-Rn01483828_m1 Target 33.33729 3.8154762 33.33729 12.380947 20.956345 0 1 Automatic Automatic 0.6977228 201204 john dawes card 1
+65 fp1 day3 v Igf1-Rn00710306_m1 Target 25.081638 5.427435 25.081638 4.1252937 20.956345 0 1 Automatic Automatic 0.5405554 201204 john dawes card 1
+66 fp1 day3 v Adrbk1-Rn00562822_m1 Target Undetermined 9.188782 27.27368 6.317335 20.956345 0 1 Automatic Automatic 1.1925166 201204 john dawes card 1
+67 fp1 day3 v Tnfsf10-Rn00595556_m1 Target 28.947643 5.8071294 28.947643 7.9912987 20.956345 0 1 Automatic Automatic 0.7377486 201204 john dawes card 1
+68 fp1 day3 v Ccl3-Rn00564660_m1 Target 32.913536 1.0754277 32.913536 11.957191 20.956345 0 1 Automatic Automatic 0.20858486 201204 john dawes card 1
+69 fp1 day3 v Ccr2-Rn00573193_s1 Target 28.542072 5.773488 28.542072 7.5857277 20.956345 0 1 Automatic Automatic 0.51234233 201204 john dawes card 1
+70 fp1 day3 v Ccl11-Rn00569995_m1 Target 28.314419 5.518369 28.314419 7.358074 20.956345 0 1 Automatic Automatic 0.6014034 201204 john dawes card 1
+71 fp1 day3 v Txnip-Rn01533890_g1 Target 23.708374 8.156988 23.708374 2.7520294 20.956345 0 1 Automatic Automatic 0.7374579 201204 john dawes card 1
+72 fp1 day3 v Nfkb1-Rn01399583_m1 Target 28.705462 7.737983 28.705462 7.749117 20.956345 0 1 Automatic Automatic 0.960099 201204 john dawes card 1
+73 fp1 day3 v Xcl1-Rn00592605_m1 Target 33.763393 2.2978349 33.763393 12.807049 20.956345 0 1 Automatic Automatic 0.40686604 201204 john dawes card 1
+74 fp1 day3 v Ccl21b-Rn01764651_g1 Target 28.852835 5.8280845 28.852835 7.89649 20.956345 0 1 Automatic Automatic 0.7431351 201204 john dawes card 1
+75 fp1 day3 v Ccl5-Rn00579590_m1 Target 31.592503 4.992985 31.592503 10.636158 20.956345 0 1 Automatic Automatic 0.6787538 201204 john dawes card 1
+76 fp1 day3 v Ptges-Rn00572047_m1 Target 28.535074 8.7451935 28.535074 7.5787296 20.956345 0 1 Automatic Automatic 1.0433096 201204 john dawes card 1
+77 fp1 day3 v Tlr4-Rn00569848_m1 Target 29.288208 5.8460994 29.288208 8.331863 20.956345 0 1 Automatic Automatic 0.60153335 201204 john dawes card 1
+78 fp1 day3 v Cxcl9-Rn00595504_m1 Target 31.060436 5.284937 31.060436 10.104092 20.956345 0 1 Automatic Automatic 0.6019537 201204 john dawes card 1
+79 fp1 day3 v Ltb4r-Rn00572209_s1 Target 36.668293 0.28488064 36.668293 15.711948 20.956345 0 1 Automatic Automatic 0.10144025 201204 john dawes card 1
+80 fp1 day3 v Edn2-Rn00561135_m1 Target Undetermined 0.021176279 40 19.043655 20.956345 Automatic Automatic 0.2 201204 john dawes card 1
+81 fp1 day3 v Cxcl5-Rn00573587_g1 Target 34.09223 4.6371946 34.09223 13.135887 20.956345 0 1 Automatic Automatic 0.749637 201204 john dawes card 1
+82 fp1 day3 v C5r1-Rn00586108_m1 Target 27.056982 8.282403 27.056982 6.1006374 20.956345 0 1 Automatic Automatic 1.0027024 201204 john dawes card 1
+83 fp1 day3 v Ccl6-Rn01456402_g1 Target 26.716898 6.5630684 26.716898 5.7605534 20.956345 0 1 Automatic Automatic 0.81505364 201204 john dawes card 1
+84 fp1 day3 v Gapdh-Rn99999916_s1 Endogenous Control 24.081127 5.6152186 20.956345 Automatic Automatic 0.6178933 201204 john dawes card 1
+85 fp1 day3 v Il4-Rn01456866_m1 Target Undetermined 0.03033936 40 19.043655 20.956345 Automatic Automatic 0.5125734 201204 john dawes card 1
+86 fp1 day3 v Vhl-Rn00583795_m1 Target 29.547085 5.6589575 29.547085 8.59074 20.956345 0 1 Automatic Automatic 0.6962761 201204 john dawes card 1
+87 fp1 day3 v Edn1-Rn00561129_m1 Target 30.922304 4.237666 30.922304 9.96596 20.956345 0 1 Automatic Automatic 0.62083536 201204 john dawes card 1
+88 fp1 day3 v Ccl24-Rn01481451_m1 Target 28.843798 5.240823 28.843798 7.887453 20.956345 0 1 Automatic Automatic 0.5972034 201204 john dawes card 1
+89 fp1 day3 v Il1a-Rn00566700_m1 Target 28.936264 2.0344691 28.936264 7.9799194 20.956345 0 1 Automatic Automatic 0.059066646 201204 john dawes card 1
+90 fp1 day3 v Cxcr4-Rn00573522_s1 Target 28.4187 8.944963 28.4187 7.4623547 20.956345 0 1 Automatic Automatic 1.1586581 201204 john dawes card 1
+91 fp1 day3 v Agtrl1-Rn00580252_s1 Target 25.82239 7.3267536 25.82239 4.866045 20.956345 0 1 Automatic Automatic 0.9014568 201204 john dawes card 1
+92 fp1 day3 v Tgfb1-Rn00572010_m1 Target 25.985949 6.5294094 25.985949 5.029604 20.956345 0 1 Automatic Automatic 0.6234665 201204 john dawes card 1
+93 fp1 day3 v Fgf2-Rn00570809_m1 Target 28.7091 5.8525004 28.7091 7.752756 20.956345 0 1 Automatic Automatic 0.665144 201204 john dawes card 1
+94 fp1 day3 v Myd88-Rn01640052_g1 Target 28.609472 7.073977 28.609472 7.6531277 20.956345 0 1 Automatic Automatic 0.7758144 201204 john dawes card 1
+95 fp1 day3 v Ccbp2-Rn00589581_m1 Target 30.387293 5.986703 30.387293 9.430948 20.956345 0 1 Automatic Automatic 0.71280897 201204 john dawes card 1
+96 fp1 day3 v Cx3cl1-Rn00593186_m1 Target 28.102549 5.9564533 28.102549 7.146204 20.956345 0 1 Automatic Automatic 0.69514847 201204 john dawes card 1
+97 fp2 day3 v Il12a-Rn00584538_m1 Target 32.23947 8.574296 32.23947 11.006191 21.23328 0.40779495 0.7537746 Automatic Automatic 1.0175787 201204 john dawes card 1
+98 fp2 day3 v Cebpe-Rn00567306_g1 Target 33.191975 1.541578 33.191975 11.958694 21.23328 -0.039409637 1.0276932 Automatic Automatic 0.26428357 201204 john dawes card 1
+99 fp2 day3 v Il5-Rn01459975_m1 Target 34.760574 2.7201128 34.760574 13.527294 21.23328 -1.1704826 2.2508698 Automatic Automatic 0.36130795 201204 john dawes card 1
+100 fp2 day3 v Slit2-Rn00575268_m1 Target 32.3337 5.557443 32.3337 11.100418 21.23328 -0.06398773 1.0453513 Automatic Automatic 0.95422596 201204 john dawes card 1
+101 fp2 day3 v Ptgds-Rn00564605_m1 Target 32.702732 4.8740635 32.702732 11.469452 21.23328 -2.6411705 6.238376 Automatic Automatic 0.37859982 201204 john dawes card 1
+102 fp2 day3 v Cxcr3-Rn00584689_m1 Target 33.764767 5.5799885 33.764767 12.5314865 21.23328 1.0474663 0.48381713 Automatic Automatic 0.89772755 201204 john dawes card 1
+103 fp2 day3 v Il2-Rn00587673_m1 Target 36.80096 2.7382386 36.80096 15.56768 21.23328 1.300209 0.40606734 Automatic Automatic 0.7051987 201204 john dawes card 1
+104 fp2 day3 v Il8ra-Rn00570857_s1 Target 35.738995 2.5782974 35.738995 14.505714 21.23328 -0.51449203 1.4284911 Automatic Automatic 0.29705846 201204 john dawes card 1
+105 fp2 day3 v Rgs3-Rn00571037_m1 Target 28.876366 6.2316685 28.876366 7.6430855 21.23328 0.15050316 0.9009362 Automatic Automatic 0.6562716 201204 john dawes card 1
+106 fp2 day3 v Alpl-Rn00564931_m1 Target 32.81128 5.9131107 32.81128 11.577999 21.23328 -0.9206085 1.8929136 Automatic Automatic 0.87829894 201204 john dawes card 1
+107 fp2 day3 v 18S-Hs99999901_s1 Endogenous Control 21.23328 7.490567 21.23328 21.23328 Automatic Automatic 0.8473376 201204 john dawes card 1
+108 fp2 day3 v Pdgfa-Rn00709363_m1 Target 28.500809 8.151927 28.500809 7.2675285 21.23328 -0.22135925 1.1658314 Automatic Automatic 1.151145 201204 john dawes card 1
+109 fp2 day3 v Mmp13-Rn01448197_m1 Target 35.288925 2.5723329 35.288925 14.055645 21.23328 0.09662247 0.9352199 Automatic Automatic 0.4351176 201204 john dawes card 1
+110 fp2 day3 v Tnf-Rn99999017_m1 Target 31.258484 4.1648197 31.258484 10.025204 21.23328 -0.90291977 1.8698465 Automatic Automatic 0.6038425 201204 john dawes card 1
+111 fp2 day3 v Grb2-Rn00578230_m1 Target 33.667976 0.6633346 33.667976 12.434696 21.23328 -0.14931107 1.1090398 Automatic Automatic 0.2312383 201204 john dawes card 1
+112 fp2 day3 v Il1b-Rn00580432_m1 Target 32.46613 5.316649 32.46613 11.232849 21.23328 0.7174187 0.60818464 Automatic Automatic 0.7981445 201204 john dawes card 1
+113 fp2 day3 v Ccl9-Rn01471276_m1 Target 31.92365 2.9931252 31.92365 10.690371 21.23328 -0.32694435 1.2543538 Automatic Automatic 0.42461607 201204 john dawes card 1
+114 fp2 day3 v Cxcl10-Rn00594648_m1 Target 30.88078 5.6884575 30.88078 9.647499 21.23328 1.641079 0.3206166 Automatic Automatic 0.6213923 201204 john dawes card 1
+115 fp2 day3 v Runx2-Rn01512296_m1 Target 31.170954 0.53218377 31.170954 9.937674 21.23328 -0.97657394 1.9677868 Automatic Automatic 0.10030804 201204 john dawes card 1
+116 fp2 day3 v Ccr1-Rn00571950_s1 Target 29.34314 4.7291045 29.34314 8.109859 21.23328 -0.10266495 1.073755 Automatic Automatic 0.46858382 201204 john dawes card 1
+117 fp2 day3 v Cx3cr1-Rn00591798_m1 Target 29.135885 7.8775177 29.135885 7.902605 21.23328 0.43318748 0.74062365 Automatic Automatic 0.76806015 201204 john dawes card 1
+118 fp2 day3 v Ccl4-Rn00587826_m1 Target 32.56193 4.740169 32.56193 11.328651 21.23328 0.16937256 0.88922936 Automatic Automatic 0.7759767 201204 john dawes card 1
+119 fp2 day3 v Ifng-Rn00594078_m1 Target 36.953075 3.269693 36.953075 15.719795 21.23328 -3.3238602 10.013401 Automatic Automatic 1.0265654 201204 john dawes card 1
+120 fp2 day3 v Gpr30-Rn00592091_s1 Target 30.552988 6.1491733 30.552988 9.319708 21.23328 -0.08734131 1.0624105 Automatic Automatic 0.7717798 201204 john dawes card 1
+121 fp2 day3 v Col2a1-Rn00491926_g1 Target 28.931536 3.4315844 28.931536 7.6982555 21.23328 -0.77549934 1.7117825 Automatic Automatic 0.15269013 201204 john dawes card 1
+122 fp2 day3 v Cxcl2-Rn00586403_m1 Target 33.88242 4.163608 33.88242 12.649139 21.23328 -2.2157059 4.6450877 Automatic Automatic 0.6235918 201204 john dawes card 1
+123 fp2 day3 v Bdnf-Rn00560868_m1 Target Undetermined 0.027431965 40 18.76672 21.23328 Automatic Automatic 0.2 201204 john dawes card 1
+124 fp2 day3 v Il12b-Rn00575112_m1 Target 34.4357 5.791442 34.4357 13.202419 21.23328 -0.4540825 1.3699113 Automatic Automatic 1.0121967 201204 john dawes card 1
+125 fp2 day3 v Il6-Rn00561420_m1 Target 36.41455 3.1362286 36.41455 15.181271 21.23328 1.7604752 0.29515094 Automatic Automatic 0.7106979 201204 john dawes card 1
+126 fp2 day3 v Tnfrsf1a-Rn00565310_m1 Target 27.485153 4.752837 27.485153 6.251873 21.23328 -0.18735695 1.1386757 Automatic Automatic 0.6337161 201204 john dawes card 1
+127 fp2 day3 v Il8rb-Rn00567841_m1 Target 33.370106 3.8827314 33.370106 12.136826 21.23328 -0.70355225 1.6285096 Automatic Automatic 0.57857907 201204 john dawes card 1
+128 fp2 day3 v Cxcl11-Rn00788262_g1 Target 35.283234 1.8293743 35.283234 14.049953 21.23328 1.2636757 0.4164815 Automatic Automatic 0.31151986 201204 john dawes card 1
+129 fp2 day3 v Vegfa-Rn00582935_m1 Target 27.008163 7.0633073 27.008163 5.7748833 21.23328 0.13310623 0.911866 Automatic Automatic 0.91666675 201204 john dawes card 1
+130 fp2 day3 v Il13-Rn00587615_m1 Target 35.907425 2.8021975 35.907425 14.674145 21.23328 -4.3695107 20.670633 Automatic Automatic 0.7238301 201204 john dawes card 1
+131 fp2 day3 v Ccl20-Rn00570287_m1 Target Undetermined 0.018332243 40 18.76672 21.23328 Automatic Automatic 0.6032615 201204 john dawes card 1
+132 fp2 day3 v Tac1-Rn00562002_m1 Target 35.264717 3.2870266 35.264717 14.031437 21.23328 0.6820679 0.6232713 Automatic Automatic 0.5766078 201204 john dawes card 1
+133 fp2 day3 v B2m-Rn00560865_m1 Target 21.89334 7.7329817 21.89334 0.660059 21.23328 -0.048164368 1.0339485 Automatic Automatic 0.8998897 201204 john dawes card 1
+134 fp2 day3 v Actb-Rn00667869_m1 Endogenous Control 21.002623 8.189337 21.23328 Automatic Automatic 0.770067 201204 john dawes card 1
+135 fp2 day3 v Hif1a-Rn00577560_m1 Target 27.541433 7.095241 27.541433 6.308153 21.23328 -0.20561028 1.153174 Automatic Automatic 1.0161575 201204 john dawes card 1
+136 fp2 day3 v Ccl17-Rn00589290_m1 Target Undetermined 0.022369385 40 18.76672 21.23328 5.725998 0.018893085 Automatic Automatic 0.12348082 201204 john dawes card 1
+137 fp2 day3 v Pten-Rn00477208_m1 Target 25.330946 5.4219604 25.330946 4.097666 21.23328 -0.09166527 1.0655994 Automatic Automatic 0.70178765 201204 john dawes card 1
+138 fp2 day3 v Ngfb-Rn01533872_m1 Target 33.34065 4.22228 33.34065 12.107368 21.23328 0.5179825 0.69834775 Automatic Automatic 0.8326259 201204 john dawes card 1
+139 fp2 day3 v Il10-Rn00563409_m1 Target Undetermined 0.018501759 40 18.76672 21.23328 Automatic Automatic 0.28454646 201204 john dawes card 1
+140 fp2 day3 v Cxcl12-Rn00573260_m1 Target 26.043053 7.8180065 26.043053 4.8097725 21.23328 0.02394867 0.9835371 Automatic Automatic 1.0438013 201204 john dawes card 1
+141 fp2 day3 v Il1rap-Rn00492642_m1 Target 30.930454 6.45089 30.930454 9.697174 21.23328 0.011909485 0.99177897 Automatic Automatic 1.044433 201204 john dawes card 1
+142 fp2 day3 v Stat3-Rn00562562_m1 Target 25.655262 6.4777803 25.655262 4.421982 21.23328 -0.41969872 1.3376482 Automatic Automatic 0.78019255 201204 john dawes card 1
+143 fp2 day3 v Ccr5-Rn00588629_m1 Target 29.579483 7.6488776 29.579483 8.346203 21.23328 0.42058945 0.7471193 Automatic Automatic 0.9460624 201204 john dawes card 1
+144 fp2 day3 v Cxcl1-Rn00578225_m1 Target 33.678387 3.3306732 33.678387 12.4451065 21.23328 -0.54753876 1.46159 Automatic Automatic 0.6588785 201204 john dawes card 1
+145 fp2 day3 v Csf3-Rn00567344_m1 Target Undetermined 0.036993504 40 18.76672 21.23328 5.067814 0.029815082 Automatic Automatic 0.23247567 201204 john dawes card 1
+146 fp2 day3 v Il18-Rn00824548_m1 Target 28.82354 5.5921297 28.82354 7.5902596 21.23328 -0.23430252 1.1763378 Automatic Automatic 0.59288484 201204 john dawes card 1
+147 fp2 day3 v Ccr3-Rn00588614_m1 Target Undetermined 0.08357251 40 18.76672 21.23328 4.767994 0.036702093 Automatic Automatic 0.20174281 201204 john dawes card 1
+148 fp2 day3 v Ccr4-Rn00591783_s1 Target 34.56727 3.0615187 34.56727 13.333988 21.23328 -2.7551346 6.7511563 Automatic Automatic 0.39073327 201204 john dawes card 1
+149 fp2 day3 v Ccr9-Rn00597283_m1 Target 35.86197 2.0011117 35.86197 14.628689 21.23328 -0.015613556 1.0108813 Automatic Automatic 0.30018288 201204 john dawes card 1
+150 fp2 day3 v Jak2-Rn00580452_m1 Target 28.767708 5.561025 28.767708 7.5344276 21.23328 0.1469078 0.90318424 Automatic Automatic 0.8382364 201204 john dawes card 1
+151 fp2 day3 v Cmklr1-Rn00573616_s1 Target 26.671719 7.5385857 26.671719 5.4384384 21.23328 -0.10759163 1.0774281 Automatic Automatic 0.8251539 201204 john dawes card 1
+152 fp2 day3 v Ccl2-Rn00580555_m1 Target 29.571 2.3322175 29.571 8.337719 21.23328 -0.659605 1.57965 Automatic Automatic 0.26797473 201204 john dawes card 1
+153 fp2 day3 v Lif-Rn00573491_g1 Target 34.480934 4.6888657 34.480934 13.247654 21.23328 0.2621498 0.8338444 Automatic Automatic 1.0591687 201204 john dawes card 1
+154 fp2 day3 v Ccl22-Rn01536591_m1 Target 32.917614 3.39131 32.917614 11.684334 21.23328 0.93959236 0.5213802 Automatic Automatic 0.56238765 201204 john dawes card 1
+155 fp2 day3 v Ccl7-Rn01467286_m1 Target 29.100945 6.044457 29.100945 7.8676643 21.23328 0.43248177 0.74098605 Automatic Automatic 0.7429022 201204 john dawes card 1
+156 fp2 day3 v Ccl28-Rn00586715_m1 Target Undetermined 0.031784058 40 18.76672 21.23328 Automatic Automatic 0.06297014 201204 john dawes card 1
+157 fp2 day3 v Adipoq-Rn00595250_m1 Target 20.886103 7.3555827 20.886103 -0.3471775 21.23328 -0.32989502 1.2569219 Automatic Automatic 0.5794267 201204 john dawes card 1
+158 fp2 day3 v Col1a1-Rn00801649_g1 Target 19.506718 5.1803374 19.506718 -1.7265625 21.23328 -0.3197174 1.2480861 Automatic Automatic 0.6879202 201204 john dawes card 1
+159 fp2 day3 v Mmp7-Rn00563467_m1 Target Undetermined 0.017774701 40 18.76672 21.23328 5.1465645 0.028231224 Automatic Automatic 0.4870306 201204 john dawes card 1
+160 fp2 day3 v Ptgs2-Rn01483828_m1 Target 33.32275 4.2656975 33.32275 12.08947 21.23328 -0.2914772 1.2238928 Automatic Automatic 0.6977228 201204 john dawes card 1
+161 fp2 day3 v Igf1-Rn00710306_m1 Target 24.592213 5.0486197 24.592213 3.3589325 21.23328 -0.76636124 1.7009742 Automatic Automatic 0.5405554 201204 john dawes card 1
+162 fp2 day3 v Adrbk1-Rn00562822_m1 Target Undetermined 8.133445 27.29372 6.06044 21.23328 -0.25689507 1.1949043 Automatic Automatic 1.1925166 201204 john dawes card 1
+163 fp2 day3 v Tnfsf10-Rn00595556_m1 Target 28.87777 5.182793 28.87777 7.6444893 21.23328 -0.3468094 1.271745 Automatic Automatic 0.7377486 201204 john dawes card 1
+164 fp2 day3 v Ccl3-Rn00564660_m1 Target 33.588356 0.89741755 33.588356 12.355076 21.23328 0.39788437 0.75897044 Automatic Automatic 0.20858486 201204 john dawes card 1
+165 fp2 day3 v Ccr2-Rn00573193_s1 Target 29.061155 5.1517696 29.061155 7.827875 21.23328 0.24214745 0.84548587 Automatic Automatic 0.51234233 201204 john dawes card 1
+166 fp2 day3 v Ccl11-Rn00569995_m1 Target 28.07596 5.6033597 28.07596 6.84268 21.23328 -0.5153942 1.4293847 Automatic Automatic 0.6014034 201204 john dawes card 1
+167 fp2 day3 v Txnip-Rn01533890_g1 Target 23.171627 7.4625 23.171627 1.9383469 21.23328 -0.81368256 1.7576923 Automatic Automatic 0.7374579 201204 john dawes card 1
+168 fp2 day3 v Nfkb1-Rn01399583_m1 Target 28.701374 6.9937963 28.701374 7.468094 21.23328 -0.28102303 1.2150562 Automatic Automatic 0.960099 201204 john dawes card 1
+169 fp2 day3 v Xcl1-Rn00592605_m1 Target 34.630898 2.1455922 34.630898 13.397617 21.23328 0.59056854 0.66408116 Automatic Automatic 0.40686604 201204 john dawes card 1
+170 fp2 day3 v Ccl21b-Rn01764651_g1 Target 27.639154 5.598752 27.639154 6.4058743 21.23328 -1.4906158 2.810089 Automatic Automatic 0.7431351 201204 john dawes card 1
+171 fp2 day3 v Ccl5-Rn00579590_m1 Target 30.800554 5.371882 30.800554 9.567274 21.23328 -1.0688839 2.0978098 Automatic Automatic 0.6787538 201204 john dawes card 1
+172 fp2 day3 v Ptges-Rn00572047_m1 Target 28.64478 9.006841 28.64478 7.411499 21.23328 -0.1672306 1.1229008 Automatic Automatic 1.0433096 201204 john dawes card 1
+173 fp2 day3 v Tlr4-Rn00569848_m1 Target 29.90726 5.1279645 29.90726 8.673981 21.23328 0.3421173 0.7888827 Automatic Automatic 0.60153335 201204 john dawes card 1
+174 fp2 day3 v Cxcl9-Rn00595504_m1 Target 32.177254 4.6722183 32.177254 10.943974 21.23328 0.8398819 0.5586893 Automatic Automatic 0.6019537 201204 john dawes card 1
+175 fp2 day3 v Ltb4r-Rn00572209_s1 Target 36.96988 0.2407795 36.96988 15.736599 21.23328 0.024650574 0.9830587 Automatic Automatic 0.10144025 201204 john dawes card 1
+176 fp2 day3 v Edn2-Rn00561135_m1 Target Undetermined 0.009541631 40 18.76672 21.23328 Automatic Automatic 0.2 201204 john dawes card 1
+177 fp2 day3 v Cxcl5-Rn00573587_g1 Target 34.873596 4.126367 34.873596 13.640316 21.23328 0.50442886 0.70493937 Automatic Automatic 0.749637 201204 john dawes card 1
+178 fp2 day3 v C5r1-Rn00586108_m1 Target 27.06877 7.6164765 27.06877 5.8354893 21.23328 -0.26514816 1.2017595 Automatic Automatic 1.0027024 201204 john dawes card 1
+179 fp2 day3 v Ccl6-Rn01456402_g1 Target 27.334223 5.929751 27.334223 6.1009426 21.23328 0.34038925 0.7898282 Automatic Automatic 0.81505364 201204 john dawes card 1
+180 fp2 day3 v Gapdh-Rn99999916_s1 Endogenous Control 23.956995 6.1444063 21.23328 Automatic Automatic 0.6178933 201204 john dawes card 1
+181 fp2 day3 v Il4-Rn01456866_m1 Target Undetermined 0.02458787 40 18.76672 21.23328 Automatic Automatic 0.5125734 201204 john dawes card 1
+182 fp2 day3 v Vhl-Rn00583795_m1 Target 29.05022 5.5170164 29.05022 7.8169403 21.23328 -0.7737999 1.7097672 Automatic Automatic 0.6962761 201204 john dawes card 1
+183 fp2 day3 v Edn1-Rn00561129_m1 Target 30.165895 4.6031585 30.165895 8.932615 21.23328 -1.0333443 2.0467632 Automatic Automatic 0.62083536 201204 john dawes card 1
+184 fp2 day3 v Ccl24-Rn01481451_m1 Target 28.811275 4.2945476 28.811275 7.5779953 21.23328 -0.30945778 1.2392418 Automatic Automatic 0.5972034 201204 john dawes card 1
+185 fp2 day3 v Il1a-Rn00566700_m1 Target 29.405386 0.27380645 29.405386 8.172106 21.23328 0.19218636 0.87527823 Automatic Automatic 0.059066646 201204 john dawes card 1
+186 fp2 day3 v Cxcr4-Rn00573522_s1 Target 29.273893 7.756599 29.273893 8.040613 21.23328 0.5782585 0.6697718 Automatic Automatic 1.1586581 201204 john dawes card 1
+187 fp2 day3 v Agtrl1-Rn00580252_s1 Target 26.038464 6.0867987 26.038464 4.8051834 21.23328 -0.060861588 1.0430886 Automatic Automatic 0.9014568 201204 john dawes card 1
+188 fp2 day3 v Tgfb1-Rn00572010_m1 Target 25.82622 5.926521 25.82622 4.5929394 21.23328 -0.43666458 1.3534715 Automatic Automatic 0.6234665 201204 john dawes card 1
[TRUNCATED]
To get the complete diff run:
svnlook diff /svnroot/qpcr -r 117
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