[Qpcr-commits] r109 - in pkg/NormqPCR: . inst inst/doc man

[noreply at r-forge.r-project.org]

Author: stamats
Date: 2010-05-22 10:45:05 +0200 (Sat, 22 May 2010)
New Revision: 109

Modified:
   pkg/NormqPCR/DESCRIPTION
   pkg/NormqPCR/inst/CITATION
   pkg/NormqPCR/inst/doc/NormqPCR.Rnw
   pkg/NormqPCR/man/NormqPCR-package.Rd
Log:
some minor modifications/updates
R file for implementation of "deltaDeltaAvgCt" seems to be missing ...

Modified: pkg/NormqPCR/DESCRIPTION
===================================================================
--- pkg/NormqPCR/DESCRIPTION	2010-05-22 08:33:04 UTC (rev 108)
+++ pkg/NormqPCR/DESCRIPTION	2010-05-22 08:45:05 UTC (rev 109)
@@ -1,12 +1,12 @@
 Package: NormqPCR
 Version: 1.0
-Date: 2009-05-27
+Date: 2010-05-22
 Title: Functions for normalisation of RT-qPCR data
 Description: Functions for normalisation of real-time quantitative PCR data
 Author: Matthias Kohl, James Perkins
 Maintainer: James Perkins <jperkins at biochem.ucl.ac.uk>
-Depends: R(>= 2.7.0), stats, RColorBrewer, Biobase, methods, ReadqPCR
-License: GPL (>= 2)
+Depends: R(>= 2.10.0), stats, RColorBrewer, Biobase, methods, ReadqPCR, gplots
+License: LGPL-3
 LazyLoad: yes
 LazyData: yes
 URL: http://qpcr.r-forge.r-project.org/

Modified: pkg/NormqPCR/inst/CITATION
===================================================================
--- pkg/NormqPCR/inst/CITATION	2010-05-22 08:33:04 UTC (rev 108)
+++ pkg/NormqPCR/inst/CITATION	2010-05-22 08:45:05 UTC (rev 109)
@@ -1,3 +1,7 @@
+if(!exists("meta") || is.null(meta)) meta <- packageDescription("NormqPCR")
+year <- sub("-.*", "", meta$Date)
+note <- sprintf("R package version %s", meta$Version)
+
 citHeader("To cite package NormqPCR in publications use:")
 
 citEntry(entry="Manual",
@@ -4,6 +8,11 @@
          title = "NormqPCR: Functions for normalisation of RT-qPCR data",
          author = personList(as.person("M. Kohl"), as.person("J. Perkins")),
          language = "English",
-         year = 2008,
+         year = year,
+         note = note,
          type = "R package",
-textVersion = paste("Kohl, M. and Perkins, J., (2008).", "NormqPCR: Functions for normalisation of RT-qPCR data.", "R package."))
+         url = "http://qpcr.r-forge.r-project.org/",
+         textVersion = paste("Kohl, M. and Perkins, J.",
+                             sprintf("(%s).", year),
+                             "NormqPCR: Functions for normalisation of RT-qPCR data.",
+                             paste(note, ".", sep = "")))

Modified: pkg/NormqPCR/inst/doc/NormqPCR.Rnw
===================================================================
--- pkg/NormqPCR/inst/doc/NormqPCR.Rnw	2010-05-22 08:33:04 UTC (rev 108)
+++ pkg/NormqPCR/inst/doc/NormqPCR.Rnw	2010-05-22 08:45:05 UTC (rev 109)
@@ -39,7 +39,7 @@
 \title{NormqPCR: Functions for normalisation of RT-qPCR data}
 %-------------------------------------------------------------------------------
 \author{James Perkins and Matthias Kohl\\ 
-University College London (UK) / University of Bayreuth (Germany)\medskip\\
+University College London (UK) / Jena University Hospital (Germany)\medskip\\
 }
 \maketitle
 \tableofcontents

Modified: pkg/NormqPCR/man/NormqPCR-package.Rd
===================================================================
--- pkg/NormqPCR/man/NormqPCR-package.Rd	2010-05-22 08:33:04 UTC (rev 108)
+++ pkg/NormqPCR/man/NormqPCR-package.Rd	2010-05-22 08:45:05 UTC (rev 109)
@@ -13,9 +13,12 @@
 Package: \tab NormqPCR\cr
 Type: \tab Package\cr
 Version: \tab 1.0\cr
-Date: \tab 2009-05-27\cr
-Depends: \tab R(>= 2.7.0), stats, RColorBrewer, Biobase, methods, ReadqPCR\cr
-License: \tab GPL (>=2)\cr
+Date: \tab 2010-05-22\cr
+Depends: \tab R(>= 2.10.0), stats, RColorBrewer, Biobase, methods, ReadqPCR, gplots\cr
+License: \tab LGPL-3\cr
+LazyLoad: \tab yes \cr
+LazyData: \tab yes \cr
+
 }
 require(NormqPCR)
 }
@@ -40,7 +43,11 @@
 %~~ Optional links to other man pages, e.g. ~~
 %~~ \code{\link[<pkg>:<pkg>-package]{<pkg>}} ~~
 %}
-%\examples{
-%~~ simple examples of the most important functions ~~
-%}
+\examples{
+## some examples are given in the vignette
+\dontrun{
+library(NormqPCR)
+vignette("NormqPCR")
+}
+}
 \keyword{package}