[Prob-commits] r41 - in pkg: . R inst/doc man vignettes

noreply at r-forge.r-project.org noreply at r-forge.r-project.org
Sun Oct 27 22:27:04 CET 2013


Author: gkerns
Date: 2013-10-27 22:27:03 +0100 (Sun, 27 Oct 2013)
New Revision: 41

Added:
   pkg/vignettes/
   pkg/vignettes/charfunc.Rnw
   pkg/vignettes/prob.Rnw
Removed:
   pkg/LICENSE
   pkg/inst/doc/charfunc.pdf
   pkg/inst/doc/charfunc.rnw
   pkg/inst/doc/prob.pdf
   pkg/inst/doc/prob.rnw
Modified:
   pkg/DESCRIPTION
   pkg/R/characteristicfunctions.r
   pkg/R/prob.r
   pkg/R/utils-events.r
   pkg/man/prob-package.Rd
Log:
Fix bug first reported by Ryan Morrison.  Also a lot of litte changes and fixes


Modified: pkg/DESCRIPTION
===================================================================
--- pkg/DESCRIPTION	2011-12-19 16:58:56 UTC (rev 40)
+++ pkg/DESCRIPTION	2013-10-27 21:27:03 UTC (rev 41)
@@ -1,6 +1,6 @@
 Package: prob
-Version: 0.9-3
-Date: 2011-12-19
+Version: 0.9-4
+Date: 2013-10-27
 Title: Elementary Probability on Finite Sample Spaces
 Author: G. Jay Kerns <gkerns at ysu.edu> 
 Maintainer: G. Jay Kerns <gkerns at ysu.edu>
@@ -14,6 +14,6 @@
  and conditional probability, tools for simulation and checking the law of
  large numbers, adding random variables, and finding marginal distributions.
  Characteristic functions for all base R distributions are included.
-License: GPL (>= 2)
-URL: http://prob.r-forge.r-project.org, http://people.ysu.edu/~gjkerns
+License: GPL (>= 3)
+URL: http://prob.r-forge.r-project.org, http://people.ysu.edu/~gkerns
 

Deleted: pkg/LICENSE
===================================================================
--- pkg/LICENSE	2011-12-19 16:58:56 UTC (rev 40)
+++ pkg/LICENSE	2013-10-27 21:27:03 UTC (rev 41)
@@ -1,340 +0,0 @@
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Modified: pkg/R/characteristicfunctions.r
===================================================================
--- pkg/R/characteristicfunctions.r	2011-12-19 16:58:56 UTC (rev 40)
+++ pkg/R/characteristicfunctions.r	2013-10-27 21:27:03 UTC (rev 41)
@@ -71,7 +71,7 @@
 cfhyper <- function(t, m, n, k){
     if (m < 0 || n < 0 || k < 0)
         stop("m, n, k must be positive")
-    hypergeo:::hypergeo(-k, -m, n - k + 1, exp(1i*t))/hypergeo:::hypergeo(-k, -m, n - k + 1, 1)
+    hypergeo::hypergeo(-k, -m, n - k + 1, exp(1i*t))/hypergeo::hypergeo(-k, -m, n - k + 1, 1)
 }
 
 

Modified: pkg/R/prob.r
===================================================================
--- pkg/R/prob.r	2011-12-19 16:58:56 UTC (rev 40)
+++ pkg/R/prob.r	2013-10-27 21:27:03 UTC (rev 41)
@@ -1,6 +1,4 @@
 
-
-
 `Prob` <- function (x, ...)
 UseMethod("Prob")
 
@@ -28,7 +26,7 @@
     }
     else {
         f <- substitute(given)
-        g <- eval(f, x)
+        g <- eval(f, x, enclos = parent.frame())
         if (!is.logical(g)) {
             if (!is.data.frame(given)) 
                 stop("'given' must be data.frame or evaluate to logical")
@@ -48,9 +46,6 @@
 }
 
 
-
-
-
 `Prob.ps` <- function (x, event = NULL, given = NULL, ...){
     if (is.null(x$probs)) {
         message("'space' is missing a probs component")
@@ -62,7 +57,7 @@
     else {
         e <- substitute(event)
         r <- sapply(x$outcomes, function(t) {
-            eval(e, t)
+            eval(e, t, enclos=parent.frame())
         })
         if (!is.logical(r)) 
             stop("'event' must evaluate to logical")
@@ -77,7 +72,7 @@
     else {
         f <- substitute(given)
         g <- sapply(x$outcomes, function(t) {
-            eval(f, t)
+            eval(f, t, enclos=parent.frame())
         })
         if (!is.logical(g)) {
             if (!is.probspace(given)) 

Modified: pkg/R/utils-events.r
===================================================================
--- pkg/R/utils-events.r	2011-12-19 16:58:56 UTC (rev 40)
+++ pkg/R/utils-events.r	2013-10-27 21:27:03 UTC (rev 41)
@@ -3,13 +3,11 @@
 `countrep` <- function (x, ...)
 UseMethod("countrep")
 
-
 `countrep.data.frame` <- function (x, ...){
     apply(x, MARGIN = 1, FUN = countrep, ...)
 }
 
 
-
 `countrep.default` <- function (x, vals = unique(x), nrep = 2, ...){
     res <- 0
     if (length(x) >= nrep) {
@@ -24,7 +22,6 @@
 }
 
 
-
 `isin` <- function (x, ...)
 UseMethod("isin")
 

Deleted: pkg/inst/doc/charfunc.pdf
===================================================================
--- pkg/inst/doc/charfunc.pdf	2011-12-19 16:58:56 UTC (rev 40)
+++ pkg/inst/doc/charfunc.pdf	2013-10-27 21:27:03 UTC (rev 41)
@@ -1,3596 +0,0 @@
-%PDF-1.4
-%ÐÔÅØ
-5 0 obj
-<< /S /GoTo /D (section.1) >>
-endobj
-8 0 obj
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-endobj
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-endobj
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-endobj
-13 0 obj
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-endobj
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-endobj
-17 0 obj
-<< /S /GoTo /D (subsection.2.2) >>
-endobj
-20 0 obj
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-endobj
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-<< /S /GoTo /D (subsection.2.3) >>
-endobj
-24 0 obj
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-endobj
-25 0 obj
-<< /S /GoTo /D (subsection.2.4) >>
-endobj
-28 0 obj
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-endobj
-29 0 obj
-<< /S /GoTo /D (subsection.2.5) >>
-endobj
-32 0 obj
-(2.5 Exponential Distribution: cfexp\(t, rate = 1\))
-endobj
-33 0 obj
-<< /S /GoTo /D (subsection.2.6) >>
-endobj
-36 0 obj
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-endobj
-37 0 obj
-<< /S /GoTo /D (subsection.2.7) >>
-endobj
-40 0 obj
-(2.7 Gamma Distribution: cfgamma\(t, shape, rate = 1, scale = 1/rate\))
-endobj
-41 0 obj
-<< /S /GoTo /D (subsection.2.8) >>
-endobj
-44 0 obj
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-endobj
-45 0 obj
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-endobj
-48 0 obj
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-endobj
-49 0 obj
-<< /S /GoTo /D (subsection.2.10) >>
-endobj
-52 0 obj
-(2.10 Logistic Distribution: cflogis\(t, location = 0, scale = 1\))
-endobj
-53 0 obj
-<< /S /GoTo /D (subsection.2.11) >>
-endobj
-56 0 obj
-(2.11 Lognormal Distribution: cflnorm\(t, meanlog = 0, sdlog = 1\))
-endobj
-57 0 obj
-<< /S /GoTo /D (subsection.2.12) >>
-endobj
-60 0 obj
-(2.12 Negative Binomial Distribution: cfnbinom\(t, size, prob, mu\))
-endobj
-61 0 obj
-<< /S /GoTo /D (subsection.2.13) >>
-endobj
-64 0 obj
-(2.13 Normal Distribution: cfnorm\(t, mean = 0, sd = 1\))
-endobj
-65 0 obj
-<< /S /GoTo /D (subsection.2.14) >>
-endobj
-68 0 obj
-(2.14 Poisson Distribution: cfpois\(t, lambda\))
-endobj
-69 0 obj
-<< /S /GoTo /D (subsection.2.15) >>
-endobj
-72 0 obj
-(2.15 Wilcoxon Signed Rank Distribution: cfsignrank\(t, n\))
-endobj
-73 0 obj
-<< /S /GoTo /D (subsection.2.16) >>
-endobj
-76 0 obj
-(2.16 Student's t Distribution: cft\(t, df, ncp\))
-endobj
-77 0 obj
-<< /S /GoTo /D (subsection.2.17) >>
-endobj
-80 0 obj
-(2.17 Continuous Uniform Distribution: cfunif\(t, min = 0, max = 1\))
-endobj
-81 0 obj
-<< /S /GoTo /D (subsection.2.18) >>
-endobj
-84 0 obj
-(2.18 Weibull Distribution: cfweibull\(t, shape, scale = 1\))
-endobj
-85 0 obj
-<< /S /GoTo /D (subsection.2.19) >>
-endobj
-88 0 obj
-(2.19 Wilcoxon Rank Sum Distribution: cfwilcox\(t, m, n\))
-endobj
-89 0 obj
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-endobj
-92 0 obj
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[TRUNCATED]

To get the complete diff run:
    svnlook diff /svnroot/prob -r 41


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