[Pomp-commits] r1153 - in www: content vignettes
noreply at r-forge.r-project.org
noreply at r-forge.r-project.org
Thu May 21 15:40:14 CEST 2015
Author: kingaa
Date: 2015-05-21 15:40:13 +0200 (Thu, 21 May 2015)
New Revision: 1153
Modified:
www/content/NEWS.html
www/vignettes/pomp.pdf
www/vignettes/pompjss.Rnw
www/vignettes/pompjss.pdf
Log:
- fix typos in JSS manuscript
Modified: www/content/NEWS.html
===================================================================
--- www/content/NEWS.html 2015-04-16 15:55:06 UTC (rev 1152)
+++ www/content/NEWS.html 2015-05-21 13:40:13 UTC (rev 1153)
@@ -1,10 +1,9 @@
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-<html><head><title>R: News for package 'pomp'</title>
-<meta http-equiv="Content-Type" content="text/html; charset=utf-8">
-<link rel="stylesheet" type="text/css" href="R.css">
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd"><html xmlns="http://www.w3.org/1999/xhtml"><head><title>R: News for package 'pomp'</title>
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-<table width="100%" summary="page for NEWS"><tr><td>NEWS</td><td align="right">R Documentation</td></tr></table>
+<table width="100%" summary="page for NEWS"><tr><td>NEWS</td><td style="text-align: right;">R Documentation</td></tr></table>
<h2>News for package ‘pomp’</h2>
@@ -1505,7 +1504,7 @@
<li> <p><code>rmeasure</code>, <code>dmeasure</code>, and <code>skeleton</code> are now specified by a function (or native routine) that does the computation for ONE state vector and ONE parameter vector.
This is analogous to the way that <code>init.state</code> has operated from the beginning.
It greatly simplifies model specification from the user's point of view without changing the low-level methods interfaces (pomp methods <code>rmeasure</code>, <code>dmeasure</code>, <code>skeleton</code>, <code>init.states</code>).
-However, <STRONG>this change is not backward-compatible</STRONG>: users will need to rewrite code for the <code>rmeasure</code>, <code>dmeasure</code>, and <code>skeleton</code> slots.
+However, <strong>this change is not backward-compatible</strong>: users will need to rewrite code for the <code>rmeasure</code>, <code>dmeasure</code>, and <code>skeleton</code> slots.
In practice, this should not be difficult.
It involves removing loops over <code>times</code> and columns of <code>params</code> and (if covariates are used in the measurement model or deterministic skeleton) making use of the <code>covars</code> argument passed to the user function.
</p>
Modified: www/vignettes/pomp.pdf
===================================================================
--- www/vignettes/pomp.pdf 2015-04-16 15:55:06 UTC (rev 1152)
+++ www/vignettes/pomp.pdf 2015-05-21 13:40:13 UTC (rev 1153)
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Modified: www/vignettes/pompjss.Rnw
===================================================================
--- www/vignettes/pompjss.Rnw 2015-04-16 15:55:06 UTC (rev 1152)
+++ www/vignettes/pompjss.Rnw 2015-05-21 13:40:13 UTC (rev 1153)
@@ -353,7 +353,7 @@
coef(gompertz)
init.state(gompertz)
@
-Executing \code{pompExamples()} lists other examples provided with the package.
+Executing \code{pompExample()} lists other examples provided with the package.
\subsection{Initial conditions}
@@ -2328,7 +2328,7 @@
The two most common computationally intensive tasks are assessment of Monte~Carlo variability and investigation of the role of starting values and other algorithmic settings on optimization routines.
These analyses require only embarrassingly parallel computations and need no special discussion here.
-The package contains more examples (via \code{pompExamples}), which can be used as templates for implementation of new models;
+The package contains more examples (via \code{pompExample}), which can be used as templates for implementation of new models;
the \proglang{R} and \proglang{C} code underlying these examples is provided with the package.
In addition, \pkg{pomp} provides a number of interactive demos (via \code{demo}).
Further documentation and an introductory tutorial are provided with the package and on the \pkg{pomp} website, \url{http://pomp.r-forge.r-project.org}.
Modified: www/vignettes/pompjss.pdf
===================================================================
--- www/vignettes/pompjss.pdf 2015-04-16 15:55:06 UTC (rev 1152)
+++ www/vignettes/pompjss.pdf 2015-05-21 13:40:13 UTC (rev 1153)
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[TRUNCATED]
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svnlook diff /svnroot/pomp -r 1153
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