[Pomp-commits] r1184 - pkg/pomp pkg/pomp/inst www/content www/vignettes
noreply at r-forge.r-project.org
noreply at r-forge.r-project.org
Fri Jun 5 13:31:45 CEST 2015
Author: kingaa
Date: 2015-06-05 13:31:44 +0200 (Fri, 05 Jun 2015)
New Revision: 1184
Modified:
pkg/pomp/DESCRIPTION
pkg/pomp/inst/NEWS
pkg/pomp/inst/NEWS.Rd
www/content/NEWS.html
www/vignettes/pomp.pdf
www/vignettes/pompjss.pdf
Log:
- update NEWS
Modified: pkg/pomp/DESCRIPTION
===================================================================
--- pkg/pomp/DESCRIPTION 2015-06-04 23:30:32 UTC (rev 1183)
+++ pkg/pomp/DESCRIPTION 2015-06-05 11:31:44 UTC (rev 1184)
@@ -2,7 +2,7 @@
Type: Package
Title: Statistical Inference for Partially Observed Markov Processes
Version: 0.66-4
-Date: 2015-06-04
+Date: 2015-06-05
Authors at R: c(person(given=c("Aaron","A."),family="King",
role=c("aut","cre"),email="kingaa at umich.edu"),
person(given=c("Edward","L."),family="Ionides",role=c("aut")),
Modified: pkg/pomp/inst/NEWS
===================================================================
--- pkg/pomp/inst/NEWS 2015-06-04 23:30:32 UTC (rev 1183)
+++ pkg/pomp/inst/NEWS 2015-06-05 11:31:44 UTC (rev 1184)
@@ -1,5 +1,13 @@
_N_e_w_s _f_o_r _p_a_c_k_a_g_e '_p_o_m_p'
+_C_h_a_n_g_e_s _i_n '_p_o_m_p' _v_e_r_s_i_o_n _0._6_6-_4:
+
+ ⢠A full-featured version of IF2, an improved iterated
+ filtering algorithm, is now available as âmif2â. This allows
+ a more general structure for the random perturbations applied
+ to parameters and is generally more efficient and stable than
+ IF1.
+
_C_h_a_n_g_e_s _i_n '_p_o_m_p' _v_e_r_s_i_o_n _0._6_5-_1:
⢠The unfortunately named âpompâ arguments
Modified: pkg/pomp/inst/NEWS.Rd
===================================================================
--- pkg/pomp/inst/NEWS.Rd 2015-06-04 23:30:32 UTC (rev 1183)
+++ pkg/pomp/inst/NEWS.Rd 2015-06-05 11:31:44 UTC (rev 1184)
@@ -1,5 +1,11 @@
\name{NEWS}
\title{News for package `pomp'}
+\section{Changes in \pkg{pomp} version 0.66-4}{
+ \itemize{
+ \item A full-featured version of IF2, an improved iterated filtering algorithm, is now available as \code{mif2}.
+ This allows a more general structure for the random perturbations applied to parameters and is generally more efficient and stable than IF1.
+ }
+}
\section{Changes in \pkg{pomp} version 0.65-1}{
\itemize{
\item The unfortunately named \code{pomp} arguments \code{parameter.transform} and \code{parameter.inv.transform} have been deprecated in favor of the more mnemonic \code{toEstimationScale} and \code{fromEstimationScale}.
Modified: www/content/NEWS.html
===================================================================
--- www/content/NEWS.html 2015-06-04 23:30:32 UTC (rev 1183)
+++ www/content/NEWS.html 2015-06-05 11:31:44 UTC (rev 1184)
@@ -1,12 +1,24 @@
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd"><html xmlns="http://www.w3.org/1999/xhtml"><head><title>R: News for package 'pomp'</title>
-<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
-<link rel="stylesheet" type="text/css" href="R.css" />
+<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">
+<html><head><title>R: News for package 'pomp'</title>
+<meta http-equiv="Content-Type" content="text/html; charset=utf-8">
+<link rel="stylesheet" type="text/css" href="R.css">
</head><body>
-<table width="100%" summary="page for NEWS"><tr><td>NEWS</td><td style="text-align: right;">R Documentation</td></tr></table>
+<table width="100%" summary="page for NEWS"><tr><td>NEWS</td><td align="right">R Documentation</td></tr></table>
<h2>News for package ‘pomp’</h2>
+<h3>Changes in <span class="pkg">pomp</span> version 0.66-4</h3>
+
+
+<ul>
+<li><p> A full-featured version of IF2, an improved iterated filtering algorithm, is now available as <code>mif2</code>.
+This allows a more general structure for the random perturbations applied to parameters and is generally more efficient and stable than IF1.
+</p>
+</li></ul>
+
+
+
<h3>Changes in <span class="pkg">pomp</span> version 0.65-1</h3>
@@ -1546,7 +1558,7 @@
<li> <p><code>rmeasure</code>, <code>dmeasure</code>, and <code>skeleton</code> are now specified by a function (or native routine) that does the computation for ONE state vector and ONE parameter vector.
This is analogous to the way that <code>init.state</code> has operated from the beginning.
It greatly simplifies model specification from the user's point of view without changing the low-level methods interfaces (pomp methods <code>rmeasure</code>, <code>dmeasure</code>, <code>skeleton</code>, <code>init.states</code>).
-However, <strong>this change is not backward-compatible</strong>: users will need to rewrite code for the <code>rmeasure</code>, <code>dmeasure</code>, and <code>skeleton</code> slots.
+However, <STRONG>this change is not backward-compatible</STRONG>: users will need to rewrite code for the <code>rmeasure</code>, <code>dmeasure</code>, and <code>skeleton</code> slots.
In practice, this should not be difficult.
It involves removing loops over <code>times</code> and columns of <code>params</code> and (if covariates are used in the measurement model or deterministic skeleton) making use of the <code>covars</code> argument passed to the user function.
</p>
Modified: www/vignettes/pomp.pdf
===================================================================
--- www/vignettes/pomp.pdf 2015-06-04 23:30:32 UTC (rev 1183)
+++ www/vignettes/pomp.pdf 2015-06-05 11:31:44 UTC (rev 1184)
@@ -1,677 +1,709 @@
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[TRUNCATED]
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