[Pomp-commits] r1180 - / pkg/pomp/man

[noreply at r-forge.r-project.org]

Author: kingaa
Date: 2015-06-05 01:29:08 +0200 (Fri, 05 Jun 2015)
New Revision: 1180

Added:
   TODO
Modified:
   pkg/pomp/man/mif.Rd
   pkg/pomp/man/pmcmc.Rd
Log:
- minor tweaks to documentation

Added: TODO
===================================================================
--- TODO	                        (rev 0)
+++ TODO	2015-06-04 23:29:08 UTC (rev 1180)
@@ -0,0 +1,8 @@
+- 'transform' argument for pmcmc?
+- 'initializer' -> 'rinit' and perhaps 'dinit'
+- 'initializer' via Csnippets?
+- documentation: "regular parameters" instead of "non-IVP"
+- add 'coef' method for 'mifList' objects
+- objective function for spectum matching
+- one-point SCQL function for possible use in fitting initial conditions
+- save particle filtering variance?  Prediction means are optional.  Only interesting for end-user if one wants to look at residuals.

Modified: pkg/pomp/man/mif.Rd
===================================================================
--- pkg/pomp/man/mif.Rd	2015-06-04 19:39:17 UTC (rev 1179)
+++ pkg/pomp/man/mif.Rd	2015-06-04 23:29:08 UTC (rev 1180)
@@ -34,6 +34,7 @@
 \alias{compare.mif}
 \description{
   Iterated filtering algorithms for estimating the parameters of a partially-observed Markov process.
+  Running \code{mif} causes the iterated filtering algorithm to run for a specified number of iterations.
 }
 \usage{
 \S4method{mif}{pomp}(object, Nmif = 1, start, ivps = character(0),

Modified: pkg/pomp/man/pmcmc.Rd
===================================================================
--- pkg/pomp/man/pmcmc.Rd	2015-06-04 19:39:17 UTC (rev 1179)
+++ pkg/pomp/man/pmcmc.Rd	2015-06-04 23:29:08 UTC (rev 1180)
@@ -31,6 +31,8 @@
 \alias{[,pmcmcList-method}
 \description{
   The Particle MCMC algorithm for estimating the parameters of a partially-observed Markov process.
+  Running \code{pmcmc} causes a particle random-walk Metropolis-Hastings Markov chain algorithm to run for the specified number of proposals.
+  
 }
 \usage{
 \S4method{pmcmc}{pomp}(object, Nmcmc = 1, start, proposal, pars, rw.sd, Np,