[Pomp-commits] r951 - in www: content vignettes

Fri May 16 18:40:42 CEST 2014

Author: kingaa
Date: 2014-05-16 18:40:42 +0200 (Fri, 16 May 2014)
New Revision: 951

Modified:
   www/content/NEWS.html
   www/content/vignettes.htm
   www/vignettes/advanced_topics_in_pomp.pdf
   www/vignettes/index.html
   www/vignettes/intro_to_pomp.R
   www/vignettes/intro_to_pomp.Rnw
   www/vignettes/intro_to_pomp.pdf
   www/vignettes/pomp.pdf
Log:
- bring everything up to date
- minor changes in some of the pages


Modified: www/content/NEWS.html
===================================================================

--- www/content/NEWS.html	2014-05-16 16:39:56 UTC (rev 950)
+++ www/content/NEWS.html	2014-05-16 16:40:42 UTC (rev 951)
@@ -8,6 +8,20 @@
 
 <h2>News for package ‘pomp’</h2>
 
+<h3>Changes in <span class="pkg">pomp</span> version 0.50-6</h3>
+
+
+<ul>
+<li><p> The package manual and tutorials are no longer included with the package source.
+Instead, links are provided to the <span class="pkg">pomp</span> website.
+</p>
+</li>
+<li><p> The package help pages have been revisited for accuracy and completeness.
+</p>
+</li></ul>
+
+
+
 <h3>Changes in <span class="pkg">pomp</span> version 0.50-1</h3>
 
 

Modified: www/content/vignettes.htm
===================================================================
--- www/content/vignettes.htm	2014-05-16 16:39:56 UTC (rev 950)
+++ www/content/vignettes.htm	2014-05-16 16:40:42 UTC (rev 951)
@@ -1,4 +1,4 @@
-<h2>Vignettes of package pomp</h2>
+<h2><b>pomp</b> user guides and tutorials</h2>
 
 <table>
 <tr>

Modified: www/vignettes/advanced_topics_in_pomp.pdf
===================================================================
(Binary files differ)

Modified: www/vignettes/index.html
===================================================================
--- www/vignettes/index.html	2014-05-16 16:39:56 UTC (rev 950)
+++ www/vignettes/index.html	2014-05-16 16:40:42 UTC (rev 951)
@@ -5,13 +5,23 @@
 <link rel="stylesheet" type="text/css" href="../../R.css">
 </head>
 <body>
-<h2>Vignettes of package pomp</h2>
-<dl>
-<dt><a href="intro_to_pomp.pdf">intro_to_pomp.pdf</a>:</dt>
-<dd>Introduction to <b>pomp</b></dd>
-<dt><a href=
-"advanced_topics_in_pomp.pdf">advanced_topics_in_pomp.pdf</a>:</dt>
-<dd>Advanced topics in <b>pomp</b></dd>
-</dl>
+<h2><b>pomp</b> user guides and tutorials</h2>
+
+<table>
+<tr>
+<td>Introduction to <strong>pomp</strong></td>
+<td><a target="_blank" href="vignettes/intro_to_pomp.pdf">(PDF)</a></td>
+<td><a target="_blank" href="vignettes/intro_to_pomp.R">(R code)</a></td>
+</tr>
+<tr>
+<td>Advanced topics in <strong>pomp</strong></td>
+<td><a target="_blank" href="vignettes/advanced_topics_in_pomp.pdf">(PDF)</a></td>
+<td><a target="_blank" href="vignettes/advanced_topics_in_pomp.R">(R code)</a></td>
+</tr>
+<tr>
+<td><strong>pomp</strong> package manual</td>
+<td><a target="_blank" href="vignettes/pomp.pdf">(PDF)</a></td>
+</tr>
+</table>
 </body>
 </html>

Modified: www/vignettes/intro_to_pomp.R
===================================================================
--- www/vignettes/intro_to_pomp.R	2014-05-16 16:39:56 UTC (rev 950)
+++ www/vignettes/intro_to_pomp.R	2014-05-16 16:40:42 UTC (rev 951)
@@ -1386,7 +1386,7 @@
 
 
 
-## ----sir-step-R,keep.source=T--------------------------------------------
+## ----sir-step-R----------------------------------------------------------
 
 require(pomp)
 

Modified: www/vignettes/intro_to_pomp.Rnw
===================================================================
--- www/vignettes/intro_to_pomp.Rnw	2014-05-16 16:39:56 UTC (rev 950)
+++ www/vignettes/intro_to_pomp.Rnw	2014-05-16 16:40:42 UTC (rev 951)
@@ -1766,7 +1766,7 @@
 
 The help (\code{?euler.sim}) informs us that to use \code{euler.sim}, we need to specify a function that advances the states from $t$ to $t+{\delta}t$.
 The function \code{sir.step}, defined here, does this.
-<<sir-step-R,keep.source=T>>=
+<<sir-step-R>>=
 
 require(pomp)
 

Modified: www/vignettes/intro_to_pomp.pdf
===================================================================
(Binary files differ)

Modified: www/vignettes/pomp.pdf
===================================================================
(Binary files differ)

