[Pomp-commits] r943 - in pkg/mif2: . R man

[noreply at r-forge.r-project.org]

Author: kingaa
Date: 2014-05-01 14:51:37 +0200 (Thu, 01 May 2014)
New Revision: 943

Removed:
   pkg/mif2/R/aaa.R
   pkg/mif2/man/mif2-class.Rd
Modified:
   pkg/mif2/DESCRIPTION
   pkg/mif2/man/mif2.Rd
Log:
- require R>=3.0.0
- remove unneeded 'paste0' definition
- remove documentation of 'mif2d.pomp' class


Modified: pkg/mif2/DESCRIPTION
===================================================================
--- pkg/mif2/DESCRIPTION	2014-04-30 13:28:47 UTC (rev 942)
+++ pkg/mif2/DESCRIPTION	2014-05-01 12:51:37 UTC (rev 943)
@@ -10,8 +10,8 @@
 	  )
 URL: http://pomp.r-forge.r-project.org
 Description: Inference methods for partially-observed Markov processes
-Depends: R(>= 2.15.1), pomp(>= 0.49-1), methods
+Depends: R(>= 3.0.0), pomp(>= 0.49-1), methods
 License: GPL(>= 2)
 LazyData: true
 BuildVignettes: true
-Collate: aaa.R generics.R mif2.R mif2-methods.R
+Collate: generics.R mif2.R mif2-methods.R

Deleted: pkg/mif2/R/aaa.R
===================================================================
--- pkg/mif2/R/aaa.R	2014-04-30 13:28:47 UTC (rev 942)
+++ pkg/mif2/R/aaa.R	2014-05-01 12:51:37 UTC (rev 943)
@@ -1,3 +0,0 @@
-if (!exists("paste0",where="package:base")) {
-  paste0 <- function(...) paste(...,sep="")
-}

Deleted: pkg/mif2/man/mif2-class.Rd
===================================================================
--- pkg/mif2/man/mif2-class.Rd	2014-04-30 13:28:47 UTC (rev 942)
+++ pkg/mif2/man/mif2-class.Rd	2014-05-01 12:51:37 UTC (rev 943)
@@ -1,51 +0,0 @@
-\name{mif2d.pomp-class}
-\docType{class}
-\alias{mif2d.pomp-class}
-\keyword{internal}
-\title{The "mif2d.pomp" class}
-\description{
-  The \code{mif2d.pomp} class holds a fitted model and is created by a call to \code{\link{mif2}}.
-  See \code{\link{mif2}} for usage.
-}
-\section{Objects from the Class}{
-  Objects can be created by calls to the \code{\link{mif2}} method on a \code{\link{pomp}} or \code{\link[pomp]{pfilterd.pomp-class}} object.
-  Such a call uses the MIF2 algorithm to fit the model parameters.
-}
-\section{Slots}{
-  A \code{mif2d.pomp} object is derived from a \code{pfilterd.pomp} object and therefore has all the slots of such an object.
-  The \code{mif2d.pomp} specific slots are described below.
-  \describe{
-    \item{transform}{
-      logical scalar; was the estimation done on the transformed scale?
-    }
-    \item{Nmif}{
-      integer; number of MIF2 iterations that have been completed.
-    }
-    \item{perturb.fn}{
-      function.
-    }
-    \item{conv.rec}{
-      The \dQuote{convergence record}: a matrix containing a record of the parameter values, log likelihoods, and other pertinent information, with one row for each MIF2 iteration.
-    }
-    \item{pred.mean, pred.var, filter.mean,
-      eff.sample.size, cond.loglik, saved.states, saved.params, seed,
-      Np, tol, nfail, loglik,
-      data, times, t0, rprocess, dprocess, dmeasure, rmeasure,
-      skeleton.type, skeleton, initializer, states, params,
-      statenames, paramnames, covarnames, obsnames, tcovar, covar,
-      PACKAGE, userdata}{
-      Inherited from the \code{pfilterd.pomp} class.
-    }
-  }
-}
-\section{Extends}{
-  Class \code{pfilterd.pomp}, directly.
-  See \code{\link{pfilter}}.
-}
-\section{Methods}{
-  See \code{\link{mif2}}, \link{mif2-methods}.
-}
-\author{Aaron A. King \email{kingaa at umich dot edu}}
-\seealso{\code{\link[pomp]{mif}}, \link{mif2-methods}, \code{\link[pomp]{pomp}}, \link[pomp]{pomp-class}}
-\keyword{models}
-\keyword{ts}

Modified: pkg/mif2/man/mif2.Rd
===================================================================
--- pkg/mif2/man/mif2.Rd	2014-04-30 13:28:47 UTC (rev 942)
+++ pkg/mif2/man/mif2.Rd	2014-05-01 12:51:37 UTC (rev 943)
@@ -1,6 +1,7 @@
 \name{mif2}
 \docType{methods}
 \alias{mif2}
+\alias{mif2d.pomp-class}
 \alias{mif2,mif2d.pomp-method}
 \alias{mif2-mif2d.pomp}
 \alias{mif2,pfilterd.pomp-method}