[Pomp-commits] r977 - in www: content vignettes

[noreply at r-forge.r-project.org]

Author: kingaa
Date: 2014-06-17 23:36:49 +0200 (Tue, 17 Jun 2014)
New Revision: 977

Modified:
   www/content/NEWS.html
   www/vignettes/advanced_topics_in_pomp.pdf
   www/vignettes/intro_to_pomp.R
   www/vignettes/intro_to_pomp.pdf
   www/vignettes/pomp.pdf
Log:
- update vignettes

Modified: www/content/NEWS.html
===================================================================
--- www/content/NEWS.html	2014-06-17 12:46:34 UTC (rev 976)
+++ www/content/NEWS.html	2014-06-17 21:36:49 UTC (rev 977)
@@ -8,6 +8,16 @@
 
 <h2>News for package ‘pomp’</h2>
 
+<h3>Changes in <span class="pkg">pomp</span> version 0.51-3</h3>
+
+
+<ul>
+<li> <p><code>transform</code> argument for <code>pmcmc</code> and <code>abc</code> has been removed.
+</p>
+</li></ul>
+
+
+
 <h3>Changes in <span class="pkg">pomp</span> version 0.51-2</h3>
 
 

Modified: www/vignettes/advanced_topics_in_pomp.pdf
===================================================================
(Binary files differ)

Modified: www/vignettes/intro_to_pomp.R
===================================================================
--- www/vignettes/intro_to_pomp.R	2014-06-17 12:46:34 UTC (rev 976)
+++ www/vignettes/intro_to_pomp.R	2014-06-17 21:36:49 UTC (rev 977)
@@ -304,6 +304,30 @@
 } else {
 set.seed(457645443L)
 
+tic <- Sys.time()
+sim1 <- simulate(gompertz,nsim=1000,seed=5676868L,obs=TRUE)
+toc <- Sys.time()
+g1sim <- toc-tic
+
+tic <- Sys.time()
+sim2 <- simulate(gomp2,nsim=1000,seed=5676868L,obs=TRUE)
+toc <- Sys.time()
+g2sim <- toc-tic
+
+stopifnot(all.equal(sim1,sim2))
+
+tic <- Sys.time()
+pf1 <- pfilter(gompertz,Np=10000,seed=5676868L)
+toc <- Sys.time()
+g1pf <- toc-tic
+
+tic <- Sys.time()
+pf2 <- pfilter(gomp2,Np=10000,seed=5676868L)
+toc <- Sys.time()
+g2pf <- toc-tic
+
+stopifnot(all.equal(logLik(pf1),logLik(pf2)))
+
 save(g1sim,g2sim,g1pf,g2pf,file=binary.file,compress='xz')
 }  
 

Modified: www/vignettes/intro_to_pomp.pdf
===================================================================
(Binary files differ)

Modified: www/vignettes/pomp.pdf
===================================================================
(Binary files differ)