[Pomp-commits] r753 - in pkg/pomp: . R inst man

[noreply at r-forge.r-project.org]

Author: kingaa
Date: 2012-07-31 14:47:42 +0200 (Tue, 31 Jul 2012)
New Revision: 753

Added:
   pkg/pomp/R/authors.R
Modified:
   pkg/pomp/DESCRIPTION
   pkg/pomp/inst/NEWS
   pkg/pomp/man/pfilter-methods.Rd
Log:
- add authors list
- add documentation of 'cond.logLik' and 'eff.sample.size'


Modified: pkg/pomp/DESCRIPTION
===================================================================
--- pkg/pomp/DESCRIPTION	2012-07-13 16:40:56 UTC (rev 752)
+++ pkg/pomp/DESCRIPTION	2012-07-31 12:47:42 UTC (rev 753)
@@ -2,7 +2,7 @@
 Type: Package
 Title: Statistical inference for partially observed Markov processes
 Version: 0.43-3
-Date: 2012-07-14
+Date: 2012-07-31
 Author: Aaron A. King, Edward L. Ionides, Carles Breto, Steve Ellner, Bruce Kendall, Helen Wearing, Matthew J. Ferrari, Michael Lavine, Daniel C. Reuman
 Maintainer: Aaron A. King <kingaa at umich.edu>
 URL: http://pomp.r-forge.r-project.org
@@ -12,7 +12,7 @@
 LazyLoad: true
 LazyData: false
 BuildVignettes: no
-Collate: aaa.R version.R eulermultinom.R plugins.R 
+Collate: aaa.R authors.R version.R eulermultinom.R plugins.R 
 	 parmat.R slice-design.R profile-design.R sobol.R bsplines.R sannbox.R
 	 pomp-fun.R pomp.R pomp-methods.R rmeasure-pomp.R rprocess-pomp.R init-state-pomp.R 
 	 dmeasure-pomp.R dprocess-pomp.R skeleton-pomp.R simulate-pomp.R trajectory-pomp.R plot-pomp.R 

Added: pkg/pomp/R/authors.R
===================================================================
--- pkg/pomp/R/authors.R	                        (rev 0)
+++ pkg/pomp/R/authors.R	2012-07-31 12:47:42 UTC (rev 753)
@@ -0,0 +1,12 @@
+list(
+     aak=person(given=c("Aaron","A."),family="King",role=c("aut","cre"),email="kingaa at umich.edu"),
+     eli=person(given=c("Edward","L."),family="Ionides",role=c("aut"),email="ionides at umich.edu"),
+     cb=person(given=c("Carles"),family="Breto",role=c("aut")),
+     spe=person(given=c("Stephen","P."),family="Ellner",role=c("aut")),
+     bek=person(given=c("Bruce","E."),family="Kendall",role=c("aut")),
+     mf=person(given=c("Matthew","J."),family="Ferrari",role=c("ctb")),
+     ml=person(given=c("Michael"),family="Lavine",role=c("ctb")),
+     dcr=person(given=c("Daniel","C."),family="Reuman",role=c("ctb")),
+     hw=person(given=c("Helen"),family="Wearing",role=c("ctb")),
+     snw=person(given=c("Simon","N."),family="Wood",role=c("ctb"))
+     ) -> author.list

Modified: pkg/pomp/inst/NEWS
===================================================================
--- pkg/pomp/inst/NEWS	2012-07-13 16:40:56 UTC (rev 752)
+++ pkg/pomp/inst/NEWS	2012-07-31 12:47:42 UTC (rev 753)
@@ -1,4 +1,11 @@
 NEWS
+0.43-3
+     o	Fix bug in 'pompBuilder' on mac.
+
+     o	Fix bug in 'dmeasure' when log=TRUE.  Bug located by R. Reiner.
+
+     o	Add 'eff.sample.size' and 'cond.logLik' methods for 'pfilterd.pomp' objects.
+
 0.43-1
      o	Modify 'traj.match.objfun' to allow arbitrary parameters to be passed to the ODE integrator.
 

Modified: pkg/pomp/man/pfilter-methods.Rd
===================================================================
--- pkg/pomp/man/pfilter-methods.Rd	2012-07-13 16:40:56 UTC (rev 752)
+++ pkg/pomp/man/pfilter-methods.Rd	2012-07-31 12:47:42 UTC (rev 753)
@@ -12,6 +12,12 @@
 \alias{filter.mean}
 \alias{filter.mean,pfilterd.pomp-method}
 \alias{filter.mean-pfilterd.pomp}
+\alias{eff.sample.size}
+\alias{eff.sample.size,pfilterd.pomp-method}
+\alias{eff.sample.size-pfilterd.pomp}
+\alias{cond.logLik}
+\alias{cond.logLik,pfilterd.pomp-method}
+\alias{cond.logLik-pfilterd.pomp}
 \title{Methods of the "pfilterd.pomp" class}
 \description{Methods of the "pfilterd.pomp" class.}
 \usage{
@@ -19,6 +25,8 @@
 \S4method{pred.mean}{pfilterd.pomp}(object, pars, \dots)
 \S4method{pred.var}{pfilterd.pomp}(object, pars, \dots)
 \S4method{filter.mean}{pfilterd.pomp}(object, pars, \dots)
+\S4method{eff.sample.size}{pfilterd.pomp}(object, \dots)
+\S4method{cond.logLik}{pfilterd.pomp}(object, \dots)
 }
 \arguments{
   \item{object}{