[Pomp-commits] r601 - pkg/inst/doc

[noreply at r-forge.r-project.org]

Author: kingaa
Date: 2012-01-19 13:13:28 +0100 (Thu, 19 Jan 2012)
New Revision: 601

Modified:
   pkg/inst/doc/Makefile
   pkg/inst/doc/intro_to_pomp.Rnw
   pkg/inst/doc/intro_to_pomp.pdf
Log:
- use png flag for big files


Modified: pkg/inst/doc/Makefile
===================================================================
--- pkg/inst/doc/Makefile	2012-01-19 12:12:59 UTC (rev 600)
+++ pkg/inst/doc/Makefile	2012-01-19 12:13:28 UTC (rev 601)
@@ -19,4 +19,7 @@
 	$(EPSTOPDF) $*.eps --outfile=$*.pdf
 
 clean:
-	$(RM) *.tex *.log *.aux *.blg *.bbl *.out *.Rout *.toc *.lof *.lot intro_to_pomp-*.pdf advanced_topics_in_pomp-*.pdf Rplots.ps Rplots.pdf
+	$(RM) *.tex *.log *.aux *.blg *.bbl *.out *.Rout *.toc *.lof *.lot 
+	$(RM) Rplots.pdf
+	$(RM) intro_to_pomp-*.pdf advanced_topics_in_pomp-*.pdf 
+	$(RM) intro_to_pomp-*.png advanced_topics_in_pomp-*.png

Modified: pkg/inst/doc/intro_to_pomp.Rnw
===================================================================
--- pkg/inst/doc/intro_to_pomp.Rnw	2012-01-19 12:12:59 UTC (rev 600)
+++ pkg/inst/doc/intro_to_pomp.Rnw	2012-01-19 12:13:28 UTC (rev 601)
@@ -962,7 +962,7 @@
 It is this synthetic likelihood that \pkg{pomp} attempts to maximize in probe matching.
 
 \begin{figure}
-<<ricker-probe-plot,echo=F,fig=F,results=hide>>=
+<<ricker-probe-plot,echo=F,fig=T,png=T,results=hide>>=
   pb <- probe(ricker,
               probes=list(
                 probe.marginal("y",ref=obs(ricker),transform=sqrt),
@@ -972,14 +972,8 @@
               nsim=1000,
               seed=1066L
               )
-  png(
-      filename="ricker-probe-plot.png",
-      width=6,height=6,units='in',res=300
-      )
   plot(pb)
-  dev.off()
 @ 
-\includegraphics[width=5in]{ricker-probe-plot}
 \caption{
   Results of \code{plot} on a \code{probed.pomp}-class object.
   Above the diagonal, the pairwise scatterplots show the values of the probes on each of \Sexpr{summary(pb)$nsim} data sets.

Modified: pkg/inst/doc/intro_to_pomp.pdf
===================================================================
(Binary files differ)