[Pomp-commits] r588 - pkg/inst
noreply at r-forge.r-project.org
noreply at r-forge.r-project.org
Tue Jan 10 08:41:25 CET 2012
Author: kingaa
Date: 2012-01-10 08:41:25 +0100 (Tue, 10 Jan 2012)
New Revision: 588
Modified:
pkg/inst/ChangeLog
Log:
- update ChangeLog for version 0.40-1
Modified: pkg/inst/ChangeLog
===================================================================
--- pkg/inst/ChangeLog 2012-01-10 07:21:29 UTC (rev 587)
+++ pkg/inst/ChangeLog 2012-01-10 07:41:25 UTC (rev 588)
@@ -1,3 +1,120 @@
+2012-01-10 kingaa
+
+ * [r587] .Rbuildignore: - don't ignore .rda files in inst/doc
+
+2012-01-09 kingaa
+
+ * [r586] DESCRIPTION, src/lpa.c: - add LPA model codes to src
+
+2012-01-08 kingaa
+
+ * [r585] inst/doc/manual.pdf: - updated manual
+ * [r584] DESCRIPTION, R/plugins.R, R/pomp.R, R/trajectory-pomp.R,
+ data/blowflies.rda, data/dacca.rda, data/euler.sir.rda,
+ data/gillespie.sir.rda, data/gompertz.rda, data/ou2.rda,
+ data/ricker.rda, data/rw2.rda, data/verhulst.rda, inst/NEWS,
+ inst/doc/advanced_topics_in_pomp.Rnw,
+ inst/doc/advanced_topics_in_pomp.pdf,
+ inst/doc/gompertz-multi-mif.rda, inst/doc/gompertz-trajmatch.rda,
+ inst/doc/intro_to_pomp.Rnw, inst/doc/intro_to_pomp.pdf,
+ inst/doc/manual.pdf, inst/doc/nlf-block-boot.rda,
+ inst/doc/nlf-boot.rda, inst/doc/nlf-fit-from-truth.rda,
+ inst/doc/nlf-fits.rda, inst/doc/nlf-lag-tests.rda,
+ inst/doc/nlf-multi-short.rda, inst/doc/ricker-mif.rda,
+ inst/doc/ricker-probe-match.rda, man/pomp-class.Rd, man/pomp.Rd,
+ src/euler.c, src/pomp_internal.h, src/rprocess.c,
+ src/trajectory.c, tests/sir.Rout.save: - include zeronames in
+ basic 'pomp' object. this is passed to 'rprocess' and used by the
+ codes in 'trajectory'.
+ - add a new section to the 'advanced topics' vignette to discuss
+ 'zeronames' and accumulator variables.
+ - fix a bug in 'trajectory' for maps and 'discrete.time.sim' in
+ that step sizes were treated as variable (as for Euler steps)
+ rather than as fixed.
+ * [r583] man/slice-design.Rd: - minor fix
+ * [r582] inst/data-R/blowflies.R, inst/data-R/dacca.R,
+ inst/data-R/euler.sir.R, inst/data-R/gillespie.sir.R,
+ inst/data-R/gompertz.R, inst/data-R/ou2.R, inst/data-R/ricker.R,
+ inst/data-R/rw2.R, inst/data-R/verhulst.R: - use higher
+ compression
+ * [r581] NAMESPACE:
+ * [r580] R/parmat.R, man/parmat.Rd: - the 'parmat' function to
+ construct parameter matrices in one line
+ * [r579] .Rbuildignore: - add an .Rbuildignore file
+
+2012-01-07 kingaa
+
+ * [r578] inst/doc/advanced_topics_in_pomp.Rnw, inst/examples/sir.R,
+ inst/examples/sir.c: - update the examples
+ * [r577] DESCRIPTION, R/pomp.R, R/trajectory-pomp.R,
+ data/blowflies.rda, data/dacca.rda, data/euler.sir.rda,
+ data/gillespie.sir.rda, data/gompertz.rda, data/ou2.rda,
+ data/ricker.rda, data/rw2.rda, data/verhulst.rda, inst/NEWS,
+ inst/data-R/blowflies.R, inst/data-R/dacca.R,
+ inst/data-R/euler.sir.R, inst/data-R/gillespie.sir.R,
+ inst/data-R/gompertz.R, inst/data-R/ou2.R, inst/data-R/ricker.R,
+ inst/data-R/rw2.R, inst/data-R/verhulst.R,
+ inst/doc/advanced_topics_in_pomp.pdf,
+ inst/doc/gompertz-multi-mif.rda, inst/doc/gompertz-trajmatch.rda,
+ inst/doc/intro_to_pomp.Rnw, inst/doc/intro_to_pomp.pdf,
+ inst/doc/manual.pdf, inst/doc/nlf-block-boot.rda,
+ inst/doc/nlf-boot.rda, inst/doc/nlf-fit-from-truth.rda,
+ inst/doc/nlf-fits.rda, inst/doc/nlf-lag-tests.rda,
+ inst/doc/nlf-multi-short.rda, inst/doc/ricker-mif.rda,
+ inst/doc/ricker-probe-match.rda, man/pomp-class.Rd, man/pomp.Rd,
+ src/trajectory.c: - add 'skelmap.delta.t' as a slot in the basic
+ 'pomp' object
+
+2012-01-05 kingaa
+
+ * [r576] DESCRIPTION, data/LondonYorke.rda, data/blowflies.rda,
+ data/dacca.rda, data/euler.sir.rda, data/gillespie.sir.rda,
+ data/gompertz.rda, data/ou2.rda, data/ricker.rda, data/rw2.rda,
+ data/verhulst.rda, inst/NEWS, inst/data-R/euler.sir.R,
+ inst/doc/advanced_topics_in_pomp.pdf, inst/doc/intro_to_pomp.pdf,
+ inst/doc/manual.pdf, man/trajectory-pomp.Rd: - update the data
+ files and vignettes
+ - the 'euler.sir' data()-loadable example now uses 'zeronames'
+ for the deterministic skeleton
+ * [r575] inst/doc/manual.Rnw, inst/doc/manual.pdf: - put the manual
+ into the set of vignettes
+ * [r574] tests/ou2-probe.Rout.save, tests/ricker-probe.Rout.save: -
+ update the unit tests
+ * [r573] R/trajectory-pomp.R, src/euler.c, src/pomp_internal.h,
+ src/sir.c, src/trajectory.c, tests/sir.R, tests/sir.Rout.save: -
+ put calculation of Euler steps into a separate routine, now used
+ both by the Euler plugin and by the deterministic map iterator
+ - 'trajectory' can now make use of 'zeronames' a la the Euler
+ plugin
+ - 'trajectory' for maps can now handle a general timestep
+ * [r572] inst/doc/index.html, inst/doc/manual.Rnw,
+ inst/doc/manual.pdf: - include the manual pdf among the vignettes
+
+2011-12-24 kingaa
+
+ * [r571] DESCRIPTION, R/pomp.R, man/pomp.Rd, tests/fhn.Rout.save,
+ tests/ricker-probe.Rout.save: - finish removing deprecated
+ 'skeleton.map' and 'skeleton.vectorfield' interface
+ * [r570] NAMESPACE, R/profile-design.R, R/slice-design.R,
+ R/sobol.R, man/profile-design.Rd, man/slice-design.Rd,
+ man/sobol.Rd, tests/fhn.R: - remove deprecated codes
+ 'slice.design', 'sobol.design', and 'profile.design'
+
+2011-12-14 kingaa
+
+ * [r569] inst/NEWS: - update NEWS file
+ - 'bsmc' is actually still using 'sample.int' (the last log entry
+ notwithstanding)
+
+2011-12-13 kingaa
+
+ * [r568] DESCRIPTION, R/bsmc.R, inst/ChangeLog,
+ inst/doc/advanced_topics_in_pomp.pdf, inst/doc/intro_to_pomp.pdf,
+ man/bsmc.Rd, tests/ou2-bsmc.R, tests/ou2-bsmc.Rout.save: - fix
+ some inconsistencies with the arguments of 'bsmc'
+ - switch 'bsmc' to using 'systematic_resampling' instead of
+ 'sample.int'
+
2011-11-22 kingaa
* [r567] R/bsmc.R, inst/NEWS: - update NEWS file
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