[Pomp-commits] r673 - in pkg/pomp: inst tests

[noreply at r-forge.r-project.org]

Author: kingaa
Date: 2012-04-21 16:02:33 +0200 (Sat, 21 Apr 2012)
New Revision: 673

Modified:
   pkg/pomp/inst/NEWS
   pkg/pomp/tests/pfilter.Rout.save
Log:
- update unit tests and NEWS


Modified: pkg/pomp/inst/NEWS
===================================================================
--- pkg/pomp/inst/NEWS	2012-04-21 14:01:38 UTC (rev 672)
+++ pkg/pomp/inst/NEWS	2012-04-21 14:02:33 UTC (rev 673)
@@ -1,5 +1,8 @@
 NEWS
 0.41-6
+     o	A bug in the 'blowflies' example has been fixed.
+     	Thanks to Greg Minshall for discovering it.
+
      o	The 'gompertz' example parameter transformations have been changed.
      	No longer are the names of the parameter vector changed in the transformation.
 	This change is not backward-compatible, but only codes using this example are affected.

Modified: pkg/pomp/tests/pfilter.Rout.save
===================================================================
--- pkg/pomp/tests/pfilter.Rout.save	2012-04-21 14:01:38 UTC (rev 672)
+++ pkg/pomp/tests/pfilter.Rout.save	2012-04-21 14:02:33 UTC (rev 673)
@@ -50,7 +50,7 @@
    beta3  beta.sd      pop      rho      S.0      I.0      R.0 
 3.20e+02 1.00e-03 2.10e+06 6.00e-01 6.50e-02 1.00e-03 9.35e-01 
 > print(pf$loglik,digits=4)
-[1] -964.3
+[1] -947.4
 > 
 > p <- coef(euler.sir)
 > euler.sir at params <- numeric(0)
@@ -62,8 +62,8 @@
    beta3  beta.sd      pop      rho      S.0      I.0      R.0 
 3.20e+02 1.00e-03 2.10e+06 6.00e-01 6.50e-02 1.00e-03 9.35e-01 
 > print(logLik(pf),digits=4)
-[1] -964
+[1] -945.4
 > 
 > proc.time()
    user  system elapsed 
-  5.732   0.080   5.850 
+  5.788   0.044   5.866