[Pomp-commits] r477 - in pkg: data inst inst/doc man

[noreply at r-forge.r-project.org]

Author: kingaa
Date: 2011-05-13 16:54:23 +0200 (Fri, 13 May 2011)
New Revision: 477

Modified:
   pkg/data/blowflies.rda
   pkg/data/dacca.rda
   pkg/data/euler.sir.rda
   pkg/data/gillespie.sir.rda
   pkg/data/ou2.rda
   pkg/data/rw2.rda
   pkg/data/verhulst.rda
   pkg/inst/NEWS
   pkg/inst/doc/advanced_topics_in_pomp.pdf
   pkg/inst/doc/gompertz-multi-mif.rda
   pkg/inst/doc/gompertz-trajmatch.rda
   pkg/inst/doc/intro_to_pomp.pdf
   pkg/inst/doc/ricker-mif.rda
   pkg/inst/doc/ricker-probe-match.rda
   pkg/man/pomp.Rd
Log:
- update vignettes
- update data()-loadable objects
- minor tweak to pomp man page
- tweak to NEWS file


Modified: pkg/data/blowflies.rda
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Modified: pkg/data/dacca.rda
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Modified: pkg/data/euler.sir.rda
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Modified: pkg/data/gillespie.sir.rda
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Modified: pkg/data/ou2.rda
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Modified: pkg/data/rw2.rda
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Modified: pkg/data/verhulst.rda
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Modified: pkg/inst/NEWS
===================================================================
--- pkg/inst/NEWS	2011-05-12 17:18:01 UTC (rev 476)
+++ pkg/inst/NEWS	2011-05-13 14:54:23 UTC (rev 477)
@@ -17,6 +17,7 @@
      o  It is now possible to save both the states and particles portions of the filtering distributions computed in 'pfilter'.
      	This is accomplished by means of the logical 'save.states' and 'save.params' arguments to 'pfilter'.
 	The particles are stored in rank-3 arrays in the slots 'saved.states' and 'saved.params'.
+	This results in the need for a change in the structure of 'pfilterd.pomp' objects: note that 'pfilterd.pomp' objects (including 'mif' and 'pmcmc' objects) created under pre-0.37-1 version of the package will not load under versions >= 0.37-1.
 
 0.36-7
      o  'trajectory' now gives a more informative error when no skeleton is present

Modified: pkg/inst/doc/advanced_topics_in_pomp.pdf
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Modified: pkg/inst/doc/gompertz-multi-mif.rda
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Modified: pkg/inst/doc/gompertz-trajmatch.rda
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Modified: pkg/inst/doc/intro_to_pomp.pdf
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Modified: pkg/inst/doc/ricker-mif.rda
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Modified: pkg/inst/doc/ricker-probe-match.rda
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Modified: pkg/man/pomp.Rd
===================================================================
--- pkg/man/pomp.Rd	2011-05-12 17:18:01 UTC (rev 476)
+++ pkg/man/pomp.Rd	2011-05-13 14:54:23 UTC (rev 477)
@@ -200,7 +200,7 @@
       It should be quite clear that, but for this assumption, it would be quite difficult in general to write the transition probabilities.
       In fact, from one perspective, the algorithms in \pkg{pomp} are designed to overcome just this difficulty.
 
-      \strong{At present, no methods in \code{pomp} make use of \code{dprocess}.}
+      \strong{At present, no methods in \pkg{pomp} make use of \code{dprocess}.}
     }
     \item{\code{rmeasure}}{
       if provided, must take at least the arguments \code{x}, \code{t}, \code{params}, and \code{\dots}.