[Pomp-commits] r475 - in pkg: . inst

[noreply at r-forge.r-project.org]

Author: kingaa
Date: 2011-05-12 03:46:37 +0200 (Thu, 12 May 2011)
New Revision: 475

Modified:
   pkg/DESCRIPTION
   pkg/inst/ChangeLog
   pkg/inst/NEWS
Log:
- update ChangeLog and NEWS


Modified: pkg/DESCRIPTION
===================================================================
--- pkg/DESCRIPTION	2011-05-11 21:48:20 UTC (rev 474)
+++ pkg/DESCRIPTION	2011-05-12 01:46:37 UTC (rev 475)
@@ -2,7 +2,7 @@
 Type: Package
 Title: Statistical inference for partially observed Markov processes
 Version: 0.37-1
-Date: 2011-05-11
+Date: 2011-05-12
 Author: Aaron A. King, Edward L. Ionides, Carles Breto, Steve Ellner, Bruce Kendall, Helen Wearing, 
 	Matthew J. Ferrari, Michael Lavine, Daniel C. Reuman
 Maintainer: Aaron A. King <kingaa at umich.edu>

Modified: pkg/inst/ChangeLog
===================================================================
--- pkg/inst/ChangeLog	2011-05-11 21:48:20 UTC (rev 474)
+++ pkg/inst/ChangeLog	2011-05-12 01:46:37 UTC (rev 475)
@@ -1,3 +1,26 @@
+2011-05-11  kingaa
+
+	* [r474] tests/sir-icfit.R, tests/sir-icfit.Rout.save: - add a test
+	  for the new 'pfilter'-based initial-condition-estimation method
+	* [r473] tests/ou2-forecast.R, tests/ou2-forecast.Rout.save: -
+	  update this test to use new 'save.params' option
+	* [r472] tests/logistic.Rout.save: - minor change
+	* [r471] tests/fhn.Rout.save: - minor change
+	* [r470] R/mif.R, R/pfilter.R, R/pmcmc.R, inst/NEWS,
+	  man/pfilter.Rd: - add new argument 'save.params' to 'pfilter' to
+	  allow saving the parameter portion of the particles
+	  - change the 'pfilterd.pomp' slot name 'last.states' to
+	  'saved.states', which connects with the option name
+	  - add a new slot 'saved.params' to the 'pfilterd.pomp' object
+	  - update 'pmcmc' and 'mif' in accordance with the above changes
+	  - modify 'pfilter' so that
+	  'coef(pfilter(obj,params=theta))==theta' as in 'mif', 'simulate',
+	  etc.
+	* [r469] DESCRIPTION, R/pfilter.R, inst/ChangeLog, inst/NEWS,
+	  inst/doc/advanced_topics_in_pomp.pdf, inst/doc/intro_to_pomp.pdf,
+	  src/pfilter.c: - eliminate unnecessary copying of identical
+	  parameter particles
+
 2011-05-10  kingaa
 
 	* [r468] DESCRIPTION:

Modified: pkg/inst/NEWS
===================================================================
--- pkg/inst/NEWS	2011-05-11 21:48:20 UTC (rev 474)
+++ pkg/inst/NEWS	2011-05-12 01:46:37 UTC (rev 475)
@@ -4,10 +4,11 @@
      o  The arguments 'skeleton.map' and 'skeleton.vectorfield' are now deprecated.
         Specify a discrete-time skeleton using 'skeleton.type="map"' and a continuous-time skeleton via 'skeleton.type="vectorfield"'.
 
-     o  'pomp' is now a method rather than a function.  
+     o  'pomp' is now a generic function.  
         Calling it on a 'pomp' object copies the object; one can optionally modify some of the slots.
 
-     o  Two new files 'gompertz.R' and 'gompertz.c' are in the 'examples' directory.  These contain codes needed to reproduce the Gompertz example in the 'intro_to_pomp' vignette.
+     o  Two new files 'gompertz.R' and 'gompertz.c' are in the 'examples' directory.  
+     	These contain codes needed to reproduce the Gompertz example in the 'intro_to_pomp' vignette.
 
      o  The warning messages to do with the default behaviors of 'simulate' and 'trajectory' with respect to the arguments 'times' and 't0' have been removed.
         These warnings were introduced in version 0.34-1 to alert users to changes in the default behavior of 'simulate' and 'trajectory' introduced with that version.