[Pomp-commits] r378 - pkg/tests

[noreply at r-forge.r-project.org]

Author: kingaa
Date: 2010-10-11 21:01:00 +0200 (Mon, 11 Oct 2010)
New Revision: 378

Modified:
   pkg/tests/ricker-probe.Rout.save
Log:

- update 'tests/ricker-probe.Rout.save'


Modified: pkg/tests/ricker-probe.Rout.save
===================================================================
--- pkg/tests/ricker-probe.Rout.save	2010-10-11 15:26:01 UTC (rev 377)
+++ pkg/tests/ricker-probe.Rout.save	2010-10-11 19:01:00 UTC (rev 378)
@@ -245,7 +245,7 @@
 +                               )
 +             )
    user  system elapsed 
- 10.662   0.036  10.700 
+ 10.847   0.241  11.089 
 > plot(pm)
 > 
 > cbind(truth=coef(ricker),est=coef(pm),guess=coef(po))
@@ -301,8 +301,10 @@
 +                               )
 +             )
    user  system elapsed 
-  6.355   0.015   6.372 
+  6.538   0.112   6.660 
 > plot(pm)
+> plot(as(pm,"pomp"),variables="y")
+> plot(simulate(pm),variables="y")
 > 
 > cbind(truth=coef(ricker),est=coef(pm),guess=coef(po))
               truth       est     guess
@@ -326,7 +328,7 @@
 +             )
 > pb at datvals
    marg.1    marg.2    marg.3 
-28.151972 -5.296308 -3.401414 
+25.118195 -4.413983 -4.482302 
 > summary(pb)
 $coef
     log.r log.sigma   log.phi       N.0       e.0 
@@ -337,11 +339,11 @@
 
 $quantiles
 marg.1 marg.2 marg.3 
- 1.000  0.000  0.295 
+ 1.000  0.000  0.065 
 
 $pvals
      marg.1      marg.2      marg.3 
-0.001998002 0.001998002 0.591408591 
+0.001998002 0.001998002 0.131868132 
 
 > plot(pb)
 > 
@@ -568,11 +570,11 @@
         zeronames = zeronames, tcovar = tcovar, covar = covar, 
         args = pairlist(...))
 }
-<environment: 0x2865958>
+<environment: 0x1945c88>
 process model density, dprocess = 
 function (x, times, params, log = FALSE, ...) 
 stop(sQuote("dprocess"), " not specified")
-<environment: 0x2863a38>
+<environment: 0x1944560>
 measurement model simulator, rmeasure = 
 native function '_ricker_poisson_rmeasure'
 measurement model density, dmeasure =