[Pomp-commits] r273 - www/content

noreply at r-forge.r-project.org noreply at r-forge.r-project.org
Thu Jun 24 16:55:12 CEST 2010 

Author: kingaa
Date: 2010-06-24 16:55:12 +0200 (Thu, 24 Jun 2010)
New Revision: 273

Modified:
   www/content/about.htm
   www/content/authors.htm
   www/content/pomp.bib
   www/content/refs.htm
   www/content/refs.tex
Log:
- update site to mention trajectory matching & Liu & West


Modified: www/content/about.htm
===================================================================
--- www/content/about.htm	2010-06-23 18:11:58 UTC (rev 272)
+++ www/content/about.htm	2010-06-24 14:55:12 UTC (rev 273)
@@ -1,6 +1,6 @@
-<p><strong>pomp</strong> is built around a very general realization of nonlinear partially-observed Markov processes (AKA state-space models, nonlinear stochastic dynamical systems). One specifies a model's process and measurement components; the package uses these functions in algorithms to simulate, analyze, and fit the model to data.</p>
+<p><strong>pomp</strong> provides a very general realization of nonlinear partially-observed Markov processes (AKA state-space models, nonlinear stochastic dynamical systems). One specifies a model's process and measurement components; the package uses these functions in algorithms to simulate, analyze, and fit the model to data.</p>
 
-<p>At the moment, algorithms are provided for <strong>particle filtering</strong> (AKA sequential importance sampling or sequential Monte Carlo), the <strong>likelihood maximization by iterated filtering (MIF)</strong> method of Ionides, Breto, and King (PNAS, 103:18438-18443, 2006), and the <strong>nonlinear forecasting</strong> method of Ellner and Kendall. Future support for a variety of other algorithms is envisioned. A working group of the <a href="http://nceas.ucsb.edu">National&nbsp;Center&nbsp;for&nbsp;Ecological&nbsp;Analysis&nbsp;and&nbsp;Synthesis&nbsp;(NCEAS)</a>, "Inference for Mechanistic Models", is currently implementing additional methods for this package.</p>
+<p>At the moment, algorithms are provided for basic <strong>particle filtering</strong> (AKA sequential importance sampling or sequential Monte Carlo), <strong>trajectory matching</strong>, the <strong>approximate Bayesian sequential Monte Carlo algorithm of Liu &amp; West (2001)</strong>, the <strong>likelihood maximization by iterated filtering (MIF)</strong> method of Ionides, Breto, and King (PNAS, 103:18438-18443, 2006), and the <strong>nonlinear forecasting</strong> method of Ellner and Kendall. Future support for a variety of other algorithms is envisioned. A working group of the <a href="http://nceas.ucsb.edu">National&nbsp;Center&nbsp;for&nbsp;Ecological&nbsp;Analysis&nbsp;and&nbsp;Synthesis&nbsp;(NCEAS)</a>, "Inference for Mechanistic Models", is currently implementing additional methods for this package.</p>
 
 <p>Simple worked examples are provided in <a href="http://cran.at.r-project.org/web/packages/pomp/vignettes/">vignettes</a> and in the <tt>examples</tt> directory of the installed package.</p>
 
@@ -12,6 +12,6 @@
   <tr>
     <td><a href="http://www.nsf.gov"><img src="graphics/NSF_logo.jpg" alt="link to NSF"></a></td>
 
-    <td>The development of this package has been made possible by support from the U.S. N.S.F (Grants #EF-0545276, #EF-0430120) and by the "Inference for Mechanistic Models" Working Group supported by the National Center for Ecological Analysis and Synthesis, a Center funded by NSF (Grant #DEB-0553768), the University of California, Santa Barbara, and the State of California.</td>
+    <td>The development of this package has been made possible by support from the U.S. National Science Foundation (Grants #EF-0545276, #EF-0430120), by the "Inference for Mechanistic Models" Working Group supported by the National Center for Ecological Analysis and Synthesis, a Center funded by N.S.F. (Grant #DEB-0553768), the University of California, Santa Barbara, and the State of California, and by the RAPIDD program of the Science &amp; Technology Directorate, Department of Homeland Security and the Fogarty International Center, U.S. National Institutes of Health.</td>
   </tr>
 </table>

Modified: www/content/authors.htm
===================================================================
--- www/content/authors.htm	2010-06-23 18:11:58 UTC (rev 272)
+++ www/content/authors.htm	2010-06-24 14:55:12 UTC (rev 273)
@@ -1,13 +1,17 @@
 <h3>Authors</h3>
 
 <dl>
-  <dd><a href="http://www.umich.edu/~kingaa/">Aaron King</a></dd>
+  <dd><a href="http://kinglab.eeb.lsa.umich.edu/king/">Aaron King</a></dd>
 
   <dd><a href="http://www.stat.lsa.umich.edu/~ionides/">Ed Ionides</a></dd>
 
-  <dd>Carles Bret&oacute; Mart&iacute;nez</dd>
+  <dd>Carles Bret&oacute; Martínez</dd>
 
   <dd><a href="http://www.eeb.cornell.edu/Ellner/">Steve Ellner</a></dd>
 
   <dd><a href="http://www.bren.ucsb.edu/people/Faculty/bruce_kendall.htm">Bruce Kendall</a></dd>
+
+  <dd><a href="http://www.cidd.psu.edu/people/mjf283">Matt Ferrari</a></dd>
+
+  <dd>Michael Lavine</dd>
 </dl>

Modified: www/content/pomp.bib
===================================================================
--- www/content/pomp.bib	2010-06-23 18:11:58 UTC (rev 272)
+++ www/content/pomp.bib	2010-06-24 14:55:12 UTC (rev 273)
@@ -1,4 +1,4 @@
-% This file was created with JabRef 2.5.
+% This file was created with JabRef 2.6.
 % Encoding: ISO8859_1
 
 @ARTICLE{Arulampalam2002,
@@ -297,6 +297,18 @@
   timestamp = {2008.08.13}
 }
 
+ at INCOLLECTION{Liu2001b,
+  author = {Liu, J and West, M.},
+  title = {Combining Parameter and State Estimation in Simulation-Based Filtering},
+  booktitle = {Sequential {M}onte {C}arlo Methods in Practice},
+  publisher = {Springer, New York},
+  year = {2001},
+  editor = {Doucet, A. and de Freitas, N. and Gordon, N. J.},
+  pages = {197--224},
+  owner = {kingaa},
+  timestamp = {2009.09.22}
+}
+
 @ARTICLE{Wearing2009,
   author = {Helen J Wearing and Pejman Rohani},
   title = {Estimating the duration of pertussis immunity using epidemiological

Modified: www/content/refs.htm
===================================================================
--- www/content/refs.htm	2010-06-23 18:11:58 UTC (rev 272)
+++ www/content/refs.htm	2010-06-24 14:55:12 UTC (rev 273)
@@ -40,4 +40,9 @@
 
   <dd>Inapparent infections and cholera dynamics.<br>
   Nature, <b>454</b>:877-880.<br></dd>
+
+  <dt><a name="Liu2001b">Liu, J. and M.&nbsp;West. 2001.</a></dt>
+
+  <dd>Combining parameter and state estimation in simulation-based filtering.<br>
+  In A.&nbsp;Doucet, N.&nbsp;de&nbsp;Freitas, and N.&nbsp;J. Gordon, editors, Sequential Monte Carlo Methods in Practice, pages 197-224. Springer, New York.<br></dd>
 </dl>

Modified: www/content/refs.tex
===================================================================
--- www/content/refs.tex	2010-06-23 18:11:58 UTC (rev 272)
+++ www/content/refs.tex	2010-06-24 14:55:12 UTC (rev 273)
@@ -13,6 +13,7 @@
 \nocite{Kendall1999}
 \nocite{Kendall2005}
 \nocite{King2008}
+\nocite{Liu2001b}
 
 \bibliographystyle{ecology}
 \bibliography{pomp}

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