[Pomp-commits] r162 - in pkg: . inst inst/doc

[noreply at r-forge.r-project.org]

Author: kingaa
Date: 2009-09-21 19:56:35 +0200 (Mon, 21 Sep 2009)
New Revision: 162

Modified:
   pkg/DESCRIPTION
   pkg/NAMESPACE
   pkg/inst/ChangeLog
   pkg/inst/doc/advanced_topics_in_pomp.pdf
   pkg/inst/doc/intro_to_pomp.Rnw
   pkg/inst/doc/intro_to_pomp.pdf
Log:
- version 0.25-4


Modified: pkg/DESCRIPTION
===================================================================
--- pkg/DESCRIPTION	2009-09-21 17:53:38 UTC (rev 161)
+++ pkg/DESCRIPTION	2009-09-21 17:56:35 UTC (rev 162)
@@ -1,8 +1,8 @@
 Package: pomp
 Type: Package
 Title: Statistical inference for partially observed Markov processes
-Version: 0.25-3
-Date: 2009-07-07
+Version: 0.25-4
+Date: 2009-09-21
 Author: Aaron A. King, Edward L. Ionides, Carles Martinez Breto, Steve Ellner, Bruce Kendall
 Maintainer: Aaron A. King <kingaa at umich.edu>
 Description: Inference methods for partially-observed Markov processes

Modified: pkg/NAMESPACE
===================================================================
--- pkg/NAMESPACE	2009-09-21 17:53:38 UTC (rev 161)
+++ pkg/NAMESPACE	2009-09-21 17:56:35 UTC (rev 162)
@@ -22,10 +22,10 @@
 exportClasses('pomp','mif')
 
 exportMethods(
-              'plot','show','time','print','coerce',
+              'plot','show','print','coerce',
               'dprocess','rprocess','rmeasure','dmeasure','init.state','skeleton',
               'simulate','data.array','pfilter',
-              'coef','logLik',
+              'coef','logLik','time','time<-',
               'pred.mean','pred.var','filter.mean','conv.rec',
               'particles','mif','continue','coef<-','states','trajectory'
               )
@@ -39,6 +39,7 @@
        onestep.simulate,
        onestep.density,
        sobol,
+       slice.design,
        bspline.basis,
        periodic.bspline.basis,
        compare.mif,

Modified: pkg/inst/ChangeLog
===================================================================
--- pkg/inst/ChangeLog	2009-09-21 17:53:38 UTC (rev 161)
+++ pkg/inst/ChangeLog	2009-09-21 17:56:35 UTC (rev 162)
@@ -1,5 +1,14 @@
+2009-07-08  kingaa
+
+	* [r158] man/trajmatch.Rd: make the documentation a bit more
+	  explicit
+
 2009-07-07  kingaa
 
+	* [r157] data/verhulst.rda, man/verhulst.Rd: add stochastic
+	  Verhulst-Pearl (logistic) model to the set of examples
+	* [r156] inst/ChangeLog, inst/doc/advanced_topics_in_pomp.pdf,
+	  inst/doc/intro_to_pomp.pdf:
 	* [r155] DESCRIPTION, NAMESPACE, R/trajmatch.R, data/euler.sir.rda,
 	  data/ou2.rda, data/rw2.rda, man/trajmatch.Rd,
 	  tests/ou2-mif.Rout.save, tests/ou2-trajmatch.R,

Modified: pkg/inst/doc/advanced_topics_in_pomp.pdf
===================================================================
(Binary files differ)

Modified: pkg/inst/doc/intro_to_pomp.Rnw
===================================================================
--- pkg/inst/doc/intro_to_pomp.Rnw	2009-09-21 17:53:38 UTC (rev 161)
+++ pkg/inst/doc/intro_to_pomp.Rnw	2009-09-21 17:56:35 UTC (rev 162)
@@ -411,6 +411,7 @@
 b <- diag(1,2)
 sigma <- matrix(c(true.p['sigma.1'],true.p['sigma.2'],0,true.p['sigma.3']),2,2)
 tau <- diag(true.p['tau'],2,2)
+x0 <- init.state(ou2)
 fit2 <- kalman.filter(y,x0,a,b,sigma,tau)
 @ 
 In this case, the Kalman filter gives us a log likelihood of \code{fit2\$loglik=\Sexpr{round(fit2$loglik,2)}}, while the particle filter gives us \code{fit1\$loglik=\Sexpr{round(fit1$loglik,2)}}.

Modified: pkg/inst/doc/intro_to_pomp.pdf
===================================================================
(Binary files differ)