[Pomp-commits] r52 - in pkg: data inst inst/doc
noreply at r-forge.r-project.org
noreply at r-forge.r-project.org
Mon Aug 25 23:27:38 CEST 2008
Author: kingaa
Date: 2008-08-25 23:27:38 +0200 (Mon, 25 Aug 2008)
New Revision: 52
Modified:
pkg/data/ou2.rda
pkg/inst/ChangeLog
pkg/inst/doc/compiled_code_in_pomp.pdf
pkg/inst/doc/intro_to_pomp.pdf
Log:
Modified: pkg/data/ou2.rda
===================================================================
(Binary files differ)
Modified: pkg/inst/ChangeLog
===================================================================
--- pkg/inst/ChangeLog 2008-08-25 21:23:02 UTC (rev 51)
+++ pkg/inst/ChangeLog 2008-08-25 21:27:38 UTC (rev 52)
@@ -1,27 +1,42 @@
+2008-08-25 kingaa
+
+ * [r51] R/mif.R, man/mif.Rd, tests/ou2-mif.Rout.save: error trap in
+ 'mif': 'rw.sd' must have names
+ * [r50] DESCRIPTION, inst/NEWS, man/euler.Rd: better documentation
+ in 'euler.Rd'
+
+2008-08-19 kingaa
+
+ * [r49] inst/NEWS:
+
2008-08-15 kingaa
- * tests/sir.R, tests/sir.Rout.save: improve test of SIR model
- * tests/logistic.Rout.save:
- * DESCRIPTION, src/euler.c: fix bug in Euler step
+ * [r48] data/ou2.rda, inst/ChangeLog,
+ inst/doc/compiled_code_in_pomp.pdf, inst/doc/intro_to_pomp.pdf:
+ * [r47] tests/ou2-mif.Rout.save: fix bug in Euler step
+ * [r46] tests/sir.R, tests/sir.Rout.save: improve test of SIR model
+ * [r45] tests/logistic.Rout.save:
+ * [r44] DESCRIPTION, src/euler.c: fix bug in Euler step
2008-08-14 kingaa
- * DESCRIPTION: make description more descriptive
- * inst/examples/sir.R: put trajectory computation into SIR example
+ * [r43] DESCRIPTION: make description more descriptive
+ * [r42] inst/examples/sir.R: put trajectory computation into SIR
+ example
2008-08-13 kingaa
- * data/ou2.rda, inst/doc/compiled_code_in_pomp.pdf,
+ * [r41] data/ou2.rda, inst/doc/compiled_code_in_pomp.pdf,
inst/doc/intro_to_pomp.pdf:
- * inst/ChangeLog:
- * inst/examples/sir.c: cosmetic
- * DESCRIPTION, NAMESPACE, R/aaa.R, R/pomp.R, R/trajectory-pomp.R,
- data/ou2.rda, inst/examples/logistic.R, inst/examples/sir.R,
- inst/examples/sir.c, man/mif-class.Rd, man/pomp-class.Rd,
- man/pomp.Rd, man/skeleton-pomp.Rd, man/trajectory-pomp.Rd,
- src/skeleton.c, tests/logistic.R, tests/logistic.Rout.save,
- tests/sir.R, tests/sir.Rout.save: add support for computing
- trajectories of the deterministic skeleton
+ * [r40] inst/ChangeLog:
+ * [r39] inst/examples/sir.c: cosmetic
+ * [r38] DESCRIPTION, NAMESPACE, R/aaa.R, R/pomp.R,
+ R/trajectory-pomp.R, data/ou2.rda, inst/examples/logistic.R,
+ inst/examples/sir.R, inst/examples/sir.c, man/mif-class.Rd,
+ man/pomp-class.Rd, man/pomp.Rd, man/skeleton-pomp.Rd,
+ man/trajectory-pomp.Rd, src/skeleton.c, tests/logistic.R,
+ tests/logistic.Rout.save, tests/sir.R, tests/sir.Rout.save: add
+ support for computing trajectories of the deterministic skeleton
the skeleton must now be specified when the pomp is created: if
the pomp is a discrete-time system, 'skeleton.map' is used to
specify its deterministic skeleton; if it is a continuous-time
@@ -37,74 +52,75 @@
2008-08-01 kingaa
- * inst/ChangeLog:
- * inst/ChangeLog:
- * inst/examples/logistic.R: make dprocess depend on 'log'
+ * [r37] inst/ChangeLog:
+ * [r36] inst/ChangeLog:
+ * [r35] inst/examples/logistic.R: make dprocess depend on 'log'
2008-07-31 kingaa
- * inst/NEWS:
- * DESCRIPTION:
- * R/mif.R: improved error handling in mif
- * man/pomp.Rd: fix inaccuracy in documentation of rmeasure and
- dmeasure arguments
+ * [r34] inst/NEWS:
+ * [r33] DESCRIPTION:
+ * [r32] R/mif.R: improved error handling in mif
+ * [r31] man/pomp.Rd: fix inaccuracy in documentation of rmeasure
+ and dmeasure arguments
2008-07-29 kingaa
- * inst/NEWS:
- * DESCRIPTION:
- * R/mif.R: bug fix in convergence record storage
- * R/mif.R: cosmetic
+ * [r29] inst/NEWS:
+ * [r28] DESCRIPTION:
+ * [r27] R/mif.R: bug fix in convergence record storage
+ * [r26] R/mif.R: cosmetic
2008-07-26 kingaa
- * DESCRIPTION, inst/ChangeLog, inst/NEWS,
+ * [r25] DESCRIPTION, inst/ChangeLog, inst/NEWS,
inst/doc/compiled_code_in_pomp.pdf, inst/doc/intro_to_pomp.Rnw,
inst/doc/intro_to_pomp.pdf, src/ou2.c: bug fix in
"intro_to_pomp.Rnw"
2008-07-25 kingaa
- * R/pfilter-mif.R:
- * inst/NEWS:
- * inst/NEWS:
- * data/ou2.rda, inst/ChangeLog, inst/doc/compiled_code_in_pomp.pdf,
- inst/doc/intro_to_pomp.pdf:
- * tests/ou2-mif.Rout.save: no need to set rw.sd for parameters that
- aren't estimated
- * inst/examples/logistic.R, inst/examples/rw2.R,
+ * [r24] R/pfilter-mif.R:
+ * [r23] inst/NEWS:
+ * [r22] inst/NEWS:
+ * [r21] data/ou2.rda, inst/ChangeLog,
+ inst/doc/compiled_code_in_pomp.pdf, inst/doc/intro_to_pomp.pdf:
+ * [r20] tests/ou2-mif.Rout.save: no need to set rw.sd for
+ parameters that aren't estimated
+ * [r19] inst/examples/logistic.R, inst/examples/rw2.R,
inst/examples/sir.R, tests/examples.R: add a test of the examples
in 'inst/examples' to the 'tests' directory
modify the sir.R example so that it attempts to build a
shared-object library only if .Platform$OS.type=='unix'
- * inst/doc/intro_to_pomp.Rnw, tests/ou2-mif.R: no need to include
- zeros in 'rw.sd'
- * man/mif.Rd: improve documentation regarding arguments to mif
- * R/aaa.R: remove a whole lot of stuff that somehow got in from
- pomp.devel
- * inst/examples/sir.R: fix up R-function version
- * R/aaa.R: improve error handling: fix language and use sQuote,
- dQuote where appropriate
- * DESCRIPTION:
- * R/compare.mif.R, R/dmeasure-pomp.R, R/dprocess-pomp.R, R/euler.R,
- R/init.state-pomp.R, R/mif-methods.R, R/mif.R, R/particles-mif.R,
- R/pfilter.R, R/plot-pomp.R, R/pomp-methods.R, R/pomp.R,
- R/rmeasure-pomp.R, R/rprocess-pomp.R, R/simulate-pomp.R,
- R/skeleton-pomp.R, R/sobol.R: improve error handling: fix
- language and use sQuote, dQuote where appropriate
- * R/mif.R: trap as error parameters (including ivps) which are to
- be estimated but which have zero rw.sd
+ * [r18] inst/doc/intro_to_pomp.Rnw, tests/ou2-mif.R: no need to
+ include zeros in 'rw.sd'
+ * [r17] man/mif.Rd: improve documentation regarding arguments to
+ mif
+ * [r16] R/aaa.R: remove a whole lot of stuff that somehow got in
+ from pomp.devel
+ * [r15] inst/examples/sir.R: fix up R-function version
+ * [r14] R/aaa.R: improve error handling: fix language and use
+ sQuote, dQuote where appropriate
+ * [r13] DESCRIPTION:
+ * [r12] R/compare.mif.R, R/dmeasure-pomp.R, R/dprocess-pomp.R,
+ R/euler.R, R/init.state-pomp.R, R/mif-methods.R, R/mif.R,
+ R/particles-mif.R, R/pfilter.R, R/plot-pomp.R, R/pomp-methods.R,
+ R/pomp.R, R/rmeasure-pomp.R, R/rprocess-pomp.R,
+ R/simulate-pomp.R, R/skeleton-pomp.R, R/sobol.R: improve error
+ handling: fix language and use sQuote, dQuote where appropriate
+ * [r11] R/mif.R: trap as error parameters (including ivps) which
+ are to be estimated but which have zero rw.sd
2008-07-22 kingaa
- * inst/NEWS:
- * inst/ChangeLog:
- * inst/ChangeLog, inst/O_CHANGES:
+ * [r10] inst/NEWS:
+ * [r9] inst/ChangeLog:
+ * [r8] inst/ChangeLog, inst/O_CHANGES:
2008-07-20 kingaa
- * DESCRIPTION, NAMESPACE, R/aaa.R, R/bsplines.R, R/compare.mif.R,
- R/dmeasure-pomp.R, R/dprocess-pomp.R, R/euler.R,
+ * [r7] DESCRIPTION, NAMESPACE, R/aaa.R, R/bsplines.R,
+ R/compare.mif.R, R/dmeasure-pomp.R, R/dprocess-pomp.R, R/euler.R,
R/eulermultinom.R, R/init.state-pomp.R, R/mif-methods.R, R/mif.R,
R/particles-mif.R, R/pfilter-mif.R, R/pfilter.R, R/plot-pomp.R,
R/pomp-methods.R, R/pomp.R, R/rmeasure-pomp.R, R/rprocess-pomp.R,
@@ -132,10 +148,11 @@
tests/ou2-mif.Rout.save, tests/ou2-simulate.R,
tests/ou2-simulate.Rout.save, tests/rw2.R, tests/rw2.Rout.save,
tests/sir.R, tests/sir.Rout.save: initial revision
- * data/ou2.rda:
- * data:
+ * [r6] data/ou2.rda:
+ * [r5] data:
2007-06-25 stefan7th
- * ., R, man: Email in Readme changed
+ * [r1] README, ., R, man, www, www/index.php: Email in Readme
+ changed
Modified: pkg/inst/doc/compiled_code_in_pomp.pdf
===================================================================
(Binary files differ)
Modified: pkg/inst/doc/intro_to_pomp.pdf
===================================================================
(Binary files differ)
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