[Pomp-commits] r48 - in pkg: data inst inst/doc
noreply at r-forge.r-project.org
noreply at r-forge.r-project.org
Fri Aug 15 13:01:12 CEST 2008
Author: kingaa
Date: 2008-08-15 13:01:12 +0200 (Fri, 15 Aug 2008)
New Revision: 48
Modified:
pkg/data/ou2.rda
pkg/inst/ChangeLog
pkg/inst/doc/compiled_code_in_pomp.pdf
pkg/inst/doc/intro_to_pomp.pdf
Log:
Modified: pkg/data/ou2.rda
===================================================================
(Binary files differ)
Modified: pkg/inst/ChangeLog
===================================================================
--- pkg/inst/ChangeLog 2008-08-15 10:47:51 UTC (rev 47)
+++ pkg/inst/ChangeLog 2008-08-15 11:01:12 UTC (rev 48)
@@ -1,12 +1,27 @@
+2008-08-15 kingaa
+
+ * tests/sir.R, tests/sir.Rout.save: improve test of SIR model
+ * tests/logistic.Rout.save:
+ * DESCRIPTION, src/euler.c: fix bug in Euler step
+
+2008-08-14 kingaa
+
+ * DESCRIPTION: make description more descriptive
+ * inst/examples/sir.R: put trajectory computation into SIR example
+
2008-08-13 kingaa
- * [r38] DESCRIPTION, NAMESPACE, R/aaa.R, R/pomp.R,
- R/trajectory-pomp.R, data/ou2.rda, inst/examples/logistic.R,
- inst/examples/sir.R, inst/examples/sir.c, man/mif-class.Rd,
- man/pomp-class.Rd, man/pomp.Rd, man/skeleton-pomp.Rd,
- man/trajectory-pomp.Rd, src/skeleton.c, tests/logistic.R,
- tests/logistic.Rout.save, tests/sir.R, tests/sir.Rout.save: add
- support for computing trajectories of the deterministic skeleton
+ * data/ou2.rda, inst/doc/compiled_code_in_pomp.pdf,
+ inst/doc/intro_to_pomp.pdf:
+ * inst/ChangeLog:
+ * inst/examples/sir.c: cosmetic
+ * DESCRIPTION, NAMESPACE, R/aaa.R, R/pomp.R, R/trajectory-pomp.R,
+ data/ou2.rda, inst/examples/logistic.R, inst/examples/sir.R,
+ inst/examples/sir.c, man/mif-class.Rd, man/pomp-class.Rd,
+ man/pomp.Rd, man/skeleton-pomp.Rd, man/trajectory-pomp.Rd,
+ src/skeleton.c, tests/logistic.R, tests/logistic.Rout.save,
+ tests/sir.R, tests/sir.Rout.save: add support for computing
+ trajectories of the deterministic skeleton
the skeleton must now be specified when the pomp is created: if
the pomp is a discrete-time system, 'skeleton.map' is used to
specify its deterministic skeleton; if it is a continuous-time
@@ -22,75 +37,74 @@
2008-08-01 kingaa
- * [r37] inst/ChangeLog:
- * [r36] inst/ChangeLog:
- * [r35] inst/examples/logistic.R: make dprocess depend on 'log'
+ * inst/ChangeLog:
+ * inst/ChangeLog:
+ * inst/examples/logistic.R: make dprocess depend on 'log'
2008-07-31 kingaa
- * [r34] inst/NEWS:
- * [r33] DESCRIPTION:
- * [r32] R/mif.R: improved error handling in mif
- * [r31] man/pomp.Rd: fix inaccuracy in documentation of rmeasure
- and dmeasure arguments
+ * inst/NEWS:
+ * DESCRIPTION:
+ * R/mif.R: improved error handling in mif
+ * man/pomp.Rd: fix inaccuracy in documentation of rmeasure and
+ dmeasure arguments
2008-07-29 kingaa
- * [r29] inst/NEWS:
- * [r28] DESCRIPTION:
- * [r27] R/mif.R: bug fix in convergence record storage
- * [r26] R/mif.R: cosmetic
+ * inst/NEWS:
+ * DESCRIPTION:
+ * R/mif.R: bug fix in convergence record storage
+ * R/mif.R: cosmetic
2008-07-26 kingaa
- * [r25] DESCRIPTION, inst/ChangeLog, inst/NEWS,
+ * DESCRIPTION, inst/ChangeLog, inst/NEWS,
inst/doc/compiled_code_in_pomp.pdf, inst/doc/intro_to_pomp.Rnw,
inst/doc/intro_to_pomp.pdf, src/ou2.c: bug fix in
"intro_to_pomp.Rnw"
2008-07-25 kingaa
- * [r24] R/pfilter-mif.R:
- * [r23] inst/NEWS:
- * [r22] inst/NEWS:
- * [r21] data/ou2.rda, inst/ChangeLog,
- inst/doc/compiled_code_in_pomp.pdf, inst/doc/intro_to_pomp.pdf:
- * [r20] tests/ou2-mif.Rout.save: no need to set rw.sd for
- parameters that aren't estimated
- * [r19] inst/examples/logistic.R, inst/examples/rw2.R,
+ * R/pfilter-mif.R:
+ * inst/NEWS:
+ * inst/NEWS:
+ * data/ou2.rda, inst/ChangeLog, inst/doc/compiled_code_in_pomp.pdf,
+ inst/doc/intro_to_pomp.pdf:
+ * tests/ou2-mif.Rout.save: no need to set rw.sd for parameters that
+ aren't estimated
+ * inst/examples/logistic.R, inst/examples/rw2.R,
inst/examples/sir.R, tests/examples.R: add a test of the examples
in 'inst/examples' to the 'tests' directory
modify the sir.R example so that it attempts to build a
shared-object library only if .Platform$OS.type=='unix'
- * [r18] inst/doc/intro_to_pomp.Rnw, tests/ou2-mif.R: no need to
- include zeros in 'rw.sd'
- * [r17] man/mif.Rd: improve documentation regarding arguments to
- mif
- * [r16] R/aaa.R: remove a whole lot of stuff that somehow got in
- from pomp.devel
- * [r15] inst/examples/sir.R: fix up R-function version
- * [r14] R/aaa.R: improve error handling: fix language and use
- sQuote, dQuote where appropriate
- * [r13] DESCRIPTION:
- * [r12] R/compare.mif.R, R/dmeasure-pomp.R, R/dprocess-pomp.R,
- R/euler.R, R/init.state-pomp.R, R/mif-methods.R, R/mif.R,
- R/particles-mif.R, R/pfilter.R, R/plot-pomp.R, R/pomp-methods.R,
- R/pomp.R, R/rmeasure-pomp.R, R/rprocess-pomp.R,
- R/simulate-pomp.R, R/skeleton-pomp.R, R/sobol.R: improve error
- handling: fix language and use sQuote, dQuote where appropriate
- * [r11] R/mif.R: trap as error parameters (including ivps) which
- are to be estimated but which have zero rw.sd
+ * inst/doc/intro_to_pomp.Rnw, tests/ou2-mif.R: no need to include
+ zeros in 'rw.sd'
+ * man/mif.Rd: improve documentation regarding arguments to mif
+ * R/aaa.R: remove a whole lot of stuff that somehow got in from
+ pomp.devel
+ * inst/examples/sir.R: fix up R-function version
+ * R/aaa.R: improve error handling: fix language and use sQuote,
+ dQuote where appropriate
+ * DESCRIPTION:
+ * R/compare.mif.R, R/dmeasure-pomp.R, R/dprocess-pomp.R, R/euler.R,
+ R/init.state-pomp.R, R/mif-methods.R, R/mif.R, R/particles-mif.R,
+ R/pfilter.R, R/plot-pomp.R, R/pomp-methods.R, R/pomp.R,
+ R/rmeasure-pomp.R, R/rprocess-pomp.R, R/simulate-pomp.R,
+ R/skeleton-pomp.R, R/sobol.R: improve error handling: fix
+ language and use sQuote, dQuote where appropriate
+ * R/mif.R: trap as error parameters (including ivps) which are to
+ be estimated but which have zero rw.sd
2008-07-22 kingaa
- * [r10] inst/NEWS:
- * [r9] inst/ChangeLog:
- * [r8] inst/ChangeLog, inst/O_CHANGES:
+ * inst/NEWS:
+ * inst/ChangeLog:
+ * inst/ChangeLog, inst/O_CHANGES:
2008-07-20 kingaa
- * [r7] DESCRIPTION, NAMESPACE, R/aaa.R, R/bsplines.R,
- R/compare.mif.R, R/dmeasure-pomp.R, R/dprocess-pomp.R, R/euler.R,
+ * DESCRIPTION, NAMESPACE, R/aaa.R, R/bsplines.R, R/compare.mif.R,
+ R/dmeasure-pomp.R, R/dprocess-pomp.R, R/euler.R,
R/eulermultinom.R, R/init.state-pomp.R, R/mif-methods.R, R/mif.R,
R/particles-mif.R, R/pfilter-mif.R, R/pfilter.R, R/plot-pomp.R,
R/pomp-methods.R, R/pomp.R, R/rmeasure-pomp.R, R/rprocess-pomp.R,
@@ -118,11 +132,10 @@
tests/ou2-mif.Rout.save, tests/ou2-simulate.R,
tests/ou2-simulate.Rout.save, tests/rw2.R, tests/rw2.Rout.save,
tests/sir.R, tests/sir.Rout.save: initial revision
- * [r6] data/ou2.rda:
- * [r5] data:
+ * data/ou2.rda:
+ * data:
2007-06-25 stefan7th
- * [r1] README, ., R, man, www, www/index.php: Email in Readme
- changed
+ * ., R, man: Email in Readme changed
Modified: pkg/inst/doc/compiled_code_in_pomp.pdf
===================================================================
(Binary files differ)
Modified: pkg/inst/doc/intro_to_pomp.pdf
===================================================================
(Binary files differ)
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