[Picante-commits] r193 - pkg pkg/man www

[noreply at r-forge.r-project.org]

Author: skembel
Date: 2009-10-27 19:56:29 +0100 (Tue, 27 Oct 2009)
New Revision: 193

Modified:
   pkg/DESCRIPTION
   pkg/man/comm.phylo.qr.Rd
   pkg/man/picante-package.Rd
   pkg/man/traitgram.Rd
   www/index.php
Log:
Fix typo to make cleanly on CRAN, update website for 0.7-2 release

Modified: pkg/DESCRIPTION
===================================================================
--- pkg/DESCRIPTION	2009-07-30 17:49:05 UTC (rev 192)
+++ pkg/DESCRIPTION	2009-10-27 18:56:29 UTC (rev 193)
@@ -1,8 +1,8 @@
 Package: picante
 Type: Package
 Title: R tools for integrating phylogenies and ecology
-Version: 0.7-1
-Date: 2009-7-2
+Version: 0.7-2
+Date: 2009-10-27
 Author: Steven Kembel <skembel at uoregon.edu>, David Ackerly <dackerly at berkeley.edu>, Simon Blomberg <s.blomberg1 at uq.edu.au>, Peter Cowan <pdc at berkeley.edu>, Matthew Helmus <mrhelmus at wisc.edu>, Helene Morlon  <morlon.helene at gmail.com>, Campbell Webb <cwebb at oeb.harvard.edu>
 Maintainer: Steven Kembel <skembel at uoregon.edu>
 Depends: ape, vegan, nlme

Modified: pkg/man/comm.phylo.qr.Rd
===================================================================
--- pkg/man/comm.phylo.qr.Rd	2009-07-30 17:49:05 UTC (rev 192)
+++ pkg/man/comm.phylo.qr.Rd	2009-10-27 18:56:29 UTC (rev 193)
@@ -31,7 +31,7 @@
     \item{random.qr.slopes}{A vector of quantile regression slopes calculated for each randomization}
 }
 \details{
-This function fits a quantile regression of co-occurrence versus phylogenetic distances separating species, and compares observed patterns to the patterns expected under some null model. The quantile regressions are fit using the \code{\link[brglm]{rq}} function from the \code{quantreg} package.
+This function fits a quantile regression of co-occurrence versus phylogenetic distances separating species, and compares observed patterns to the patterns expected under some null model. The quantile regressions are fit using the \code{\link[quantreg]{rq}} function from the \code{quantreg} package.
 
 Currently implemented null models (arguments to null.model):
 \describe{

Modified: pkg/man/picante-package.Rd
===================================================================
--- pkg/man/picante-package.Rd	2009-07-30 17:49:05 UTC (rev 192)
+++ pkg/man/picante-package.Rd	2009-10-27 18:56:29 UTC (rev 193)
@@ -12,8 +12,8 @@
 \tabular{ll}{
 Package: \tab picante\cr
 Type: \tab Package\cr
-Version: \tab 0.7-1\cr
-Date: \tab 2009-7-2\cr
+Version: \tab 0.7-2\cr
+Date: \tab 2009-10-27\cr
 License: \tab GPL-2\cr
 }
 }

Modified: pkg/man/traitgram.Rd
===================================================================
--- pkg/man/traitgram.Rd	2009-07-30 17:49:05 UTC (rev 192)
+++ pkg/man/traitgram.Rd	2009-10-27 18:56:29 UTC (rev 193)
@@ -23,8 +23,6 @@
 \value{
     Plots a traitgram, no values returned.
 }
-\references{ 
-}
 \author{ David Ackerly <dackerly at berkeley.edu> }
 \seealso{ \code{\link{pic3}} }
 \examples{

Modified: www/index.php
===================================================================
--- www/index.php	2009-07-30 17:49:05 UTC (rev 192)
+++ www/index.php	2009-10-27 18:56:29 UTC (rev 193)
@@ -41,7 +41,7 @@
 
 <h2>News</h2>
 <ul>
-<li>Version 0.7-1 adds the standardized effect size of Faith's PD (ses.pd)</li>
+<li>Version 0.7 adds the standardized effect size of Faith's PD (ses.pd)</li>
 <li>Several changes and new features in version 0.7
 <ul>
 <li>Added phylobeta diversity measures (comdist/comdistnt)</li>
@@ -86,7 +86,7 @@
 
 <h2>Obtaining picante</h2>
 <ul>
-<li>Version 0.7-1 is available on <a href="http://cran.r-project.org/">CRAN</a>. Simply type <strong><code>install.packages("picante")</code></strong> from within R.</li>
+<li>Version 0.7-2 is available on <a href="http://cran.r-project.org/">CRAN</a>. Simply type <strong><code>install.packages("picante")</code></strong> from within R.</li>
 <li>You can grab the latest nightly build <a href="http://r-forge.r-project.org/R/?group_id=134">here</a>, or by typing <strong><code>install.packages("picante",repos="http://R-Forge.R-project.org")</code></strong> from within R.</li>
 </ul>
 
@@ -96,7 +96,7 @@
 <h2>Citing picante</h2>
 <p>A manuscript describing the software package is in preparation. In the meantime, you can cite picante as:
 <ul><li>
-S.W. Kembel, D.D. Ackerly, S.P. Blomberg, P.D. Cowan, M.R. Helmus, H. Morlon and C.O. Webb. 2009. picante: R tools for integrating phylogenies and ecology. R package version 0.7-1. http://picante.r-forge.r-project.org
+S.W. Kembel, D.D. Ackerly, S.P. Blomberg, P.D. Cowan, M.R. Helmus, H. Morlon and C.O. Webb. 2009. picante: R tools for integrating phylogenies and ecology. R package version 0.7-2. http://picante.r-forge.r-project.org
 </li></ul>
 </p>