[Picante-commits] r204 - branches/will/man
noreply at r-forge.r-project.org
noreply at r-forge.r-project.org
Thu Nov 19 02:04:13 CET 2009
Author: will_cornwell
Date: 2009-11-19 02:04:13 +0100 (Thu, 19 Nov 2009)
New Revision: 204
Modified:
branches/will/man/evol.distinct.Rd
branches/will/man/tax.distinctiveness.Rd
Log:
fixed bug in doc
Modified: branches/will/man/evol.distinct.Rd
===================================================================
--- branches/will/man/evol.distinct.Rd 2009-11-19 00:59:55 UTC (rev 203)
+++ branches/will/man/evol.distinct.Rd 2009-11-19 01:04:13 UTC (rev 204)
@@ -2,6 +2,7 @@
\Rdversion{1.1}
\alias{evol.distinct}
%- Also NEED an '\alias' for EACH other topic documented here.
+
\title{
Species' evolutionary distinctiveness
}
@@ -19,7 +20,7 @@
a) equal splits (Redding and Mooers 2006) or b) fair proportions (Isaac et al., 2007)
}
\item{scale}{
-%% The scale option refers to whether or not the phylogeny should be scaled to a depth of 1 or, in the case of an ultrametric tree, scaled such that branch lengths are relative.
+The scale option refers to whether or not the phylogeny should be scaled to a depth of 1 or, in the case of an ultrametric tree, scaled such that branch lengths are relative.
}
\item{use.branch.lengths}{
If use.branch.lengths=FALSE, then all branch lengths are changed to 1.
@@ -34,7 +35,7 @@
the EDGE: conservation priorities based on threat and phylogeny. PLoS ONE, 2, e296.
Mark Vellend, William K. Cornwell, Karen Magnuson-Ford, and Arne ¯. Mooers. Measuring phylogenetic biodiversity
-In: Biological diversity: frontiers in measurement and assessment. Edited by Anne Magurran & Brian McGill. in press
+In: Biological diversity: frontiers in measurement and assessment. Edited by Anne Magurran and Brian McGill. in press
}
\author{
Modified: branches/will/man/tax.distinctiveness.Rd
===================================================================
--- branches/will/man/tax.distinctiveness.Rd 2009-11-19 00:59:55 UTC (rev 203)
+++ branches/will/man/tax.distinctiveness.Rd 2009-11-19 01:04:13 UTC (rev 204)
@@ -3,7 +3,7 @@
\alias{tax.distinctiveness}
%- Also NEED an '\alias' for EACH other topic documented here.
\title{
-%% ~~function to do ... ~~
+Taxonomic distinctiveness sensu Vane-Wright or May
}
\description{
Taxic diversity: Vane-Wright et al., 1991 and May 1990 which accounts for polytomies by counting the number of branches descending from each node that lies on the path from a spp tip to the root (not just counting the number of nodes).
@@ -19,6 +19,7 @@
\item{type}{
specify "Vane-Wright" or "May"
}
+}
\references{
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