[Phylobase-devl] various build questions

Ben Bolker bolker at ufl.edu
Thu Jul 8 23:58:25 CEST 2010

  hi folks ...

  current version of phylobase is building/checking on my machine
(32-bit Linux: it was choking on R CMD check, but re-installing seems to
have fixed that).

 * R-forge shows that builds on R-devel (2.12.0) are not working because
"Rscript" can't be found (this applies both to linux and windows 32 bit).


  I'm having some trouble building R-devel on my machine but will
hopefully succeed soon.

  * Furthermore, 64-bit windows builds on win-builder.r-project.org are
failing, with a variety of errors, listed in:


  Any thoughts?  Anyone have a 64-bit windows machine for testing
purposes ... ?  (I will see if I can get access to one here, but it
could take a little while ...)


  the first few errors in the 64-bit windows build are:

nxsmultiformat.cpp: In member function 'bool
MultiFormatReader::readFastaSequences(FileToCharBuffer&, const
NxsDiscreteDatatypeMapper&, std::list<std::basic_string<char,
std::char_traits<char>, std::allocator<char> >,
std::allocator<std::basic_string<char, std::char_traits<char>,
std::allocator<char> > > >&, std::list<std::vector<int,
std::allocator<int> >, std::allocator<std::vector<int,
std::allocator<int> > > >&, size_t&)':
nxsmultiformat.cpp:334: error: ambiguous overload for 'operator<<' in
char*)"Illegal state code
char*)"\" found when reading character ")) <<
((NxsDiscreteStateRow*)row)->std::vector<_Tp, _Alloc>::size [with _Tp =
int, _Alloc = std::allocator<int>]()'
./ncl/nxsstring.h:582: note: candidates are: NxsString&
./ncl/nxsstring.h:591: note:                 NxsString&
NxsString::operator<<(unsigned int)
./ncl/nxsstring.h:600: note:                 NxsString&
NxsString::operator<<(long int)
./ncl/nxsstring.h:609: note:                 NxsString&
NxsString::operator<<(long unsigned int)
./ncl/nxsstring.h:618: note:                 NxsString&
./ncl/nxsstring.h:627: note:                 NxsString&
NxsString::operator<<(const char*) <near match>
./ncl/nxsstring.h:636: note:                 NxsString&
./ncl/nxsstring.h:645: note:                 NxsString&
NxsString::operator<<(const std::string&) <near match>
./ncl/nxsstring.h:544: note:                 NxsString&
NxsString::operator<<(NxsString& (*)(NxsString&)) <near match>

Ben Bolker
***   bbolker at gmail.com , bolker at math.mcmaster.ca
bolker at ufl.edu / people.biology.ufl.edu/bolker
GPG key: people.biology.ufl.edu/bolker/benbolker-publickey.asc

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