[Phylobase-devl] failed mac build

Peter Cowan pdc at berkeley.edu
Mon Mar 24 21:07:35 CET 2008


I added a comment to the R-forge ticket that Marguerite started.

Peter

On Mar 23, 2008, at 3:47 PM, Ben Bolker wrote:
>  PS -- now that we have this 'fixed' (if not diagnosed)
> on all the machines we know of, can we take this up
> with the r-forge admins?
>
> Marguerite Butler wrote:
>> Hi Everyone,
>> We are having build errors on macs still. This has prevented the r- 
>> forge mac binaries from being produced, and I get build errors on  
>> some of my machines but not others (even with the same OS! Mac OS  
>> 10.4.11
>> There is probably an error in our config file. Unfortunately, I do  
>> not know how to debug the config file. Does anyone have experience  
>> at this? Below is the build log from the failed build. After  
>> updating my phylobase directory, I cd into it and run the following  
>> command:
>> R CMD build pkg > buildinfo.txt
>> Here is the file buildinfo.txt
>> ------------------------------------------------------------------------
>> Some additional error messages (that got dumped at the end):
>> ...
>> cpe-66-8-198-127:~/phylobase marguerite$ R CMD build pkg >  
>> buildinfo.txt
>> Loading required package: ape
>> Loading required package: gee
>> Loading required package: nlme
>> Loading required package: lattice
>> Error in parse(n = -1, file = file) : unexpected input at
>> 69: 70: <<
>> Calls: <Anonymous> -> code2LazyLoadDB -> sys.source -> parse
>> Execution halted
>> ERROR: lazy loading failed for package 'phylobase'
>> Marguerite
>> ____________________________________________
>> Marguerite A. Butler
>> Department of Zoology
>> University of Hawaii
>> 2538 McCarthy Mall, Edmondson 259
>> Honolulu, HI  96822
>> Phone: 808-956-4713
>> FAX:   808-956-9812
>> Dept: 808-956-8617
>> http://www2.hawaii.edu/~mbutler
>> http://www.hawaii.edu/zoology/
>> ------------------------------------------------------------------------
>> _______________________________________________
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>> Phylobase-devl at lists.r-forge.r-project.org
>> https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/phylobase-devl
>
>
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