[Phylobase-devl] [Phylobase-commits] r180 - pkg/tests

[Ben Bolker]

    NCL tests don't fail on my system -- what happens on yours?
Do the tests run in interactive mode but fail during testing, or is it
just testing?  I don't necessarily have a problem with short-term
commenting-out in either case (although obviously the former is
less alarming), but in the long run it would be much better to try to
fix the problem -- can you at least file a Tracker item/bug report?

  (off-topic: did you set up the Tracker for phylobase?  I was
having a little trouble figuring out how to do it for a different r-forge
package ...)

  cheers
    Ben

 

noreply at r-forge.wu-wien.ac.at wrote:
> Author: pdc
> Date: 2008-06-01 11:00:51 +0200 (Sun, 01 Jun 2008)
> New Revision: 180
>
> Modified:
>    pkg/tests/nexusdata.R
> Log:
> committing out NCL tests, as they cause R CMD check to fail
>
> Modified: pkg/tests/nexusdata.R
> ===================================================================
> --- pkg/tests/nexusdata.R	2008-05-31 19:42:00 UTC (rev 179)
> +++ pkg/tests/nexusdata.R	2008-06-01 09:00:51 UTC (rev 180)
> @@ -1,17 +1,17 @@
>  ## try to read NEXUS files
> -library(phylobase)
> -fn <- system.file("nexusfiles/treepluscharV01.nex",package="phylobase")
> -td<-NexusToPhylo4D(fn)
> -summary(td)
> +## library(phylobase)
> +## fn <- system.file("nexusfiles/treepluscharV01.nex",package="phylobase")
> +## td<-NexusToPhylo4D(fn)
> +## summary(td)
>  ## would try plotting, but typically don't have enough room
>  ## to plot data
>  ## Error in .local(x, ...) : 
>  ##    No room left to plot data; please try reducing ratio.tree or cex.label.
> -plot(as(td,"phylo4"))
> +## plot(as(td,"phylo4"))
>  
>  ## try to read a nexus file where the newick string describing the tree is split
>  ## across several lines
> -multiLine <- system.file("nexusfiles/MultiLineTrees.nex",package="phylobase")
> -multiLineTrees <-NexusToPhylo4(multiLine)
> -summary(multiLineTrees)
> +## multiLine <- system.file("nexusfiles/MultiLineTrees.nex",package="phylobase")
> +## multiLineTrees <-NexusToPhylo4(multiLine)
> +## summary(multiLineTrees)
>  
>
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