[Phylobase-devl] Urgent! problems with installing
skembel at berkeley.edu
Thu Jul 3 00:21:39 CEST 2008
There seems to be an even newer version of read.nexus on the ape svn
server (version 2.2-1), the changelog says that version fixed a bug in
read.nexus, and read.tree also seems to have been updated for 2.1-2.
Does 2.2-1 work for you?
There are some notes in the changelog for ape about updates to
read.nexus... the following might be relevant. Emmanuel probably has
read.nexus() now returns a modified object of class "multiPhylo" when
there is a TRANSLATE block in the NEXUS file: the individual trees
have no 'tip.label' vector, but the list has a 'TipLabel' attribute.
The new methods '$' and '[[' set these elements correctly when
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