[Phylobase-commits] r728 - in pkg/src/ncl: . config example/basiccmdline example/basicfactory example/normalizer ncl test test/ExternalValidIn test/ExternalValidOut test/NTSValidIn test/NTSValidOut
noreply at r-forge.r-project.org
noreply at r-forge.r-project.org
Sat Jan 30 23:15:38 CET 2010
Author: francois
Date: 2010-01-30 23:15:38 +0100 (Sat, 30 Jan 2010)
New Revision: 728
Removed:
pkg/src/ncl/._AUTHORS
pkg/src/ncl/._ChangeLog
pkg/src/ncl/._Makefile.am
pkg/src/ncl/._configure.ac
pkg/src/ncl/._nclv2.1.pc.in
pkg/src/ncl/config/._libtool.m4
pkg/src/ncl/example/basiccmdline/._basiccmdline.h
pkg/src/ncl/example/basicfactory/._basicfactory.cpp
pkg/src/ncl/example/normalizer/._Makefile.am
pkg/src/ncl/example/normalizer/._converter.cpp
pkg/src/ncl/example/normalizer/._normalizer.cpp
pkg/src/ncl/example/normalizer/._normalizer.h
pkg/src/ncl/example/normalizer/._us2ml.cpp
pkg/src/ncl/ncl/._ncl.h
pkg/src/ncl/ncl/._nxsallocatematrix.h
pkg/src/ncl/ncl/._nxsassumptionsblock.cpp
pkg/src/ncl/ncl/._nxsassumptionsblock.h
pkg/src/ncl/ncl/._nxscharactersblock.cpp
pkg/src/ncl/ncl/._nxscharactersblock.h
pkg/src/ncl/ncl/._nxscxxdiscretematrix.cpp
pkg/src/ncl/ncl/._nxscxxdiscretematrix.h
pkg/src/ncl/ncl/._nxsdefs.h
pkg/src/ncl/ncl/._nxsdistancesblock.h
pkg/src/ncl/ncl/._nxsexception.cpp
pkg/src/ncl/ncl/._nxsexception.h
pkg/src/ncl/ncl/._nxsmultiformat.cpp
pkg/src/ncl/ncl/._nxsmultiformat.h
pkg/src/ncl/ncl/._nxspublicblocks.cpp
pkg/src/ncl/ncl/._nxspublicblocks.h
pkg/src/ncl/ncl/._nxsreader.cpp
pkg/src/ncl/ncl/._nxsreader.h
pkg/src/ncl/ncl/._nxssetreader.cpp
pkg/src/ncl/ncl/._nxssetreader.h
pkg/src/ncl/ncl/._nxsstring.cpp
pkg/src/ncl/ncl/._nxstaxablock.cpp
pkg/src/ncl/ncl/._nxstaxablock.h
pkg/src/ncl/ncl/._nxstoken.cpp
pkg/src/ncl/ncl/._nxstoken.h
pkg/src/ncl/ncl/._nxstreesblock.cpp
pkg/src/ncl/ncl/._nxstreesblock.h
pkg/src/ncl/ncl/._nxsunalignedblock.cpp
pkg/src/ncl/ncl/._nxsunalignedblock.h
pkg/src/ncl/ncl/._nxsutilcopy.h
pkg/src/ncl/test/._.DS_Store
pkg/src/ncl/test/._roundTripNCLTest.py
pkg/src/ncl/test/ExternalValidIn/._aaaln_twoprot.aln
pkg/src/ncl/test/ExternalValidIn/._aaaln_twoprot_undec.aln
pkg/src/ncl/test/ExternalValidIn/._aafasta_twoprot.fas
pkg/src/ncl/test/ExternalValidOut/._.DS_Store
pkg/src/ncl/test/ExternalValidOut/._aafasta_twoprot.fas
pkg/src/ncl/test/NTSValidIn/._dzmissing_bug.nex
pkg/src/ncl/test/NTSValidIn/._notaxablock.nex
pkg/src/ncl/test/NTSValidIn/._treeswithouttaxa.nex
pkg/src/ncl/test/NTSValidOut/._dzmissing_bug.nex
pkg/src/ncl/test/NTSValidOut/._notaxablock.nex
pkg/src/ncl/test/NTSValidOut/._treeswithouttaxa.nex
Modified:
pkg/src/ncl/test/Makefile
Log:
removed hidden mac files
Deleted: pkg/src/ncl/._AUTHORS
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Deleted: pkg/src/ncl/._ChangeLog
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Deleted: pkg/src/ncl/._Makefile.am
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Deleted: pkg/src/ncl/._configure.ac
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Deleted: pkg/src/ncl/example/basiccmdline/._basiccmdline.h
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Deleted: pkg/src/ncl/example/basicfactory/._basicfactory.cpp
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Deleted: pkg/src/ncl/example/normalizer/._Makefile.am
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Deleted: pkg/src/ncl/example/normalizer/._converter.cpp
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Deleted: pkg/src/ncl/example/normalizer/._normalizer.cpp
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Deleted: pkg/src/ncl/example/normalizer/._us2ml.cpp
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Deleted: pkg/src/ncl/ncl/._ncl.h
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Deleted: pkg/src/ncl/ncl/._nxsallocatematrix.h
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Deleted: pkg/src/ncl/ncl/._nxsassumptionsblock.cpp
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Deleted: pkg/src/ncl/ncl/._nxsassumptionsblock.h
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Deleted: pkg/src/ncl/ncl/._nxscharactersblock.cpp
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Deleted: pkg/src/ncl/ncl/._nxscharactersblock.h
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Deleted: pkg/src/ncl/ncl/._nxscxxdiscretematrix.cpp
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Deleted: pkg/src/ncl/ncl/._nxscxxdiscretematrix.h
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Deleted: pkg/src/ncl/ncl/._nxsdefs.h
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Deleted: pkg/src/ncl/ncl/._nxsdistancesblock.h
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Deleted: pkg/src/ncl/ncl/._nxsexception.cpp
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Deleted: pkg/src/ncl/ncl/._nxsexception.h
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Deleted: pkg/src/ncl/ncl/._nxsmultiformat.cpp
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Deleted: pkg/src/ncl/ncl/._nxsmultiformat.h
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Deleted: pkg/src/ncl/ncl/._nxspublicblocks.cpp
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Deleted: pkg/src/ncl/ncl/._nxspublicblocks.h
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Deleted: pkg/src/ncl/ncl/._nxsreader.cpp
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Deleted: pkg/src/ncl/ncl/._nxsreader.h
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Deleted: pkg/src/ncl/ncl/._nxssetreader.cpp
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Deleted: pkg/src/ncl/ncl/._nxssetreader.h
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Deleted: pkg/src/ncl/ncl/._nxsstring.cpp
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Deleted: pkg/src/ncl/ncl/._nxstaxablock.cpp
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Deleted: pkg/src/ncl/ncl/._nxstaxablock.h
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Deleted: pkg/src/ncl/ncl/._nxstoken.cpp
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Deleted: pkg/src/ncl/ncl/._nxstoken.h
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Deleted: pkg/src/ncl/ncl/._nxstreesblock.cpp
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Deleted: pkg/src/ncl/ncl/._nxstreesblock.h
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Deleted: pkg/src/ncl/ncl/._nxsunalignedblock.cpp
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Deleted: pkg/src/ncl/ncl/._nxsunalignedblock.h
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Deleted: pkg/src/ncl/ncl/._nxsutilcopy.h
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Deleted: pkg/src/ncl/test/._.DS_Store
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Deleted: pkg/src/ncl/test/._roundTripNCLTest.py
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Deleted: pkg/src/ncl/test/ExternalValidIn/._aaaln_twoprot.aln
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Deleted: pkg/src/ncl/test/ExternalValidIn/._aaaln_twoprot_undec.aln
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Deleted: pkg/src/ncl/test/ExternalValidIn/._aafasta_twoprot.fas
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Deleted: pkg/src/ncl/test/ExternalValidOut/._.DS_Store
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Deleted: pkg/src/ncl/test/ExternalValidOut/._aafasta_twoprot.fas
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Modified: pkg/src/ncl/test/Makefile
===================================================================
--- pkg/src/ncl/test/Makefile 2010-01-30 22:12:39 UTC (rev 727)
+++ pkg/src/ncl/test/Makefile 2010-01-30 22:15:38 UTC (rev 728)
@@ -29,8 +29,8 @@
NORMAL_UNINSTALL = :
PRE_UNINSTALL = :
POST_UNINSTALL = :
-build_triplet = i386-apple-darwin9.8.0
-host_triplet = i386-apple-darwin9.8.0
+build_triplet = i686-pc-linux-gnu
+host_triplet = i686-pc-linux-gnu
subdir = test
DIST_COMMON = README $(srcdir)/Makefile.am $(srcdir)/Makefile.in
ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
@@ -49,13 +49,13 @@
SOURCES =
DIST_SOURCES =
DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
-ACLOCAL = ${SHELL} /Users/mholder/Documents/projects/ncl/working/ncl/branches/v2.1/config/missing --run aclocal-1.10
-AMTAR = ${SHELL} /Users/mholder/Documents/projects/ncl/working/ncl/branches/v2.1/config/missing --run tar
+ACLOCAL = ${SHELL} /home/francois/Work/R-dev/phylobase/pkg/src/ncl/config/missing --run aclocal-1.10
+AMTAR = ${SHELL} /home/francois/Work/R-dev/phylobase/pkg/src/ncl/config/missing --run tar
AR = ar
-AUTOCONF = ${SHELL} /Users/mholder/Documents/projects/ncl/working/ncl/branches/v2.1/config/missing --run autoconf
-AUTOHEADER = ${SHELL} /Users/mholder/Documents/projects/ncl/working/ncl/branches/v2.1/config/missing --run autoheader
-AUTOMAKE = ${SHELL} /Users/mholder/Documents/projects/ncl/working/ncl/branches/v2.1/config/missing --run automake-1.10
-AWK = gawk
+AUTOCONF = ${SHELL} /home/francois/Work/R-dev/phylobase/pkg/src/ncl/config/missing --run autoconf
+AUTOHEADER = ${SHELL} /home/francois/Work/R-dev/phylobase/pkg/src/ncl/config/missing --run autoheader
+AUTOMAKE = ${SHELL} /home/francois/Work/R-dev/phylobase/pkg/src/ncl/config/missing --run automake-1.10
+AWK = /usr/bin/awk
CC = gcc
CCDEPMODE = depmode=gcc3
CFLAGS = -g -O2
@@ -68,37 +68,37 @@
CYGPATH_W = echo
DEFS = -DHAVE_CONFIG_H
DEPDIR = .deps
-DSYMUTIL = dsymutil
+DSYMUTIL =
DUMPBIN =
-ECHO_C = \c
-ECHO_N =
+ECHO_C =
+ECHO_N = -n
ECHO_T =
-EGREP = /usr/bin/grep -E
+EGREP = /bin/grep -E
EXEEXT =
-FGREP = /usr/bin/grep -F
-GREP = /usr/bin/grep
+FGREP = /bin/grep -F
+GREP = /bin/grep
INSTALL = /usr/bin/install -c
INSTALL_DATA = ${INSTALL} -m 644
INSTALL_PROGRAM = ${INSTALL}
INSTALL_SCRIPT = ${INSTALL}
INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
-LD = /usr/libexec/gcc/i686-apple-darwin9/4.0.1/ld
+LD = /usr/bin/ld
LDFLAGS =
-LIBOBJS =
+LIBOBJS = ${LIBOBJDIR}mktime$U.o
LIBS =
LIBTOOL = $(SHELL) $(top_builddir)/libtool
-LIPO = lipo
+LIPO =
LN_S = ln -s
-LTLIBOBJS =
-MAKEINFO = ${SHELL} /Users/mholder/Documents/projects/ncl/working/ncl/branches/v2.1/config/missing --run makeinfo
+LTLIBOBJS = ${LIBOBJDIR}mktime$U.lo
+MAKEINFO = ${SHELL} /home/francois/Work/R-dev/phylobase/pkg/src/ncl/config/missing --run makeinfo
MAYBE_SWIG_DIR =
MAYBE_TEST_DIR = test
-MKDIR_P = ../config/install-sh -c -d
-NM = /usr/bin/nm -p
-NMEDIT = nmedit
+MKDIR_P = /bin/mkdir -p
+NM = /usr/bin/nm -B
+NMEDIT =
OBJEXT = o
-OTOOL = otool
-OTOOL64 = :
+OTOOL =
+OTOOL64 =
PACKAGE = ncl
PACKAGE_BUGREPORT = paul.lewis at uconn.edu
PACKAGE_NAME = NCL
@@ -107,17 +107,17 @@
PACKAGE_VERSION = 2.1.09
PATH_SEPARATOR = :
POW_LIB =
-PYTHON = /Library/Frameworks/Python.framework/Versions/2.6/bin/python
+PYTHON = /usr/bin/python
RANLIB = ranlib
-SED = /usr/bin/sed
+SED = /bin/sed
SET_MAKE =
-SHELL = /bin/sh
+SHELL = /bin/bash
STRIP = strip
VERSION = 2.1.09
-abs_builddir = /Users/mholder/Documents/projects/ncl/working/ncl/branches/v2.1/test
-abs_srcdir = /Users/mholder/Documents/projects/ncl/working/ncl/branches/v2.1/test
-abs_top_builddir = /Users/mholder/Documents/projects/ncl/working/ncl/branches/v2.1
-abs_top_srcdir = /Users/mholder/Documents/projects/ncl/working/ncl/branches/v2.1
+abs_builddir = /home/francois/Work/R-dev/phylobase/pkg/src/ncl/test
+abs_srcdir = /home/francois/Work/R-dev/phylobase/pkg/src/ncl/test
+abs_top_builddir = /home/francois/Work/R-dev/phylobase/pkg/src/ncl
+abs_top_srcdir = /home/francois/Work/R-dev/phylobase/pkg/src/ncl
ac_ct_CC = gcc
ac_ct_CXX = g++
ac_ct_DUMPBIN =
@@ -127,36 +127,36 @@
am__tar = tar --format=ustar -chf - "$$tardir"
am__untar = tar -xf -
bindir = ${exec_prefix}/bin
-build = i386-apple-darwin9.8.0
+build = i686-pc-linux-gnu
build_alias =
-build_cpu = i386
-build_os = darwin9.8.0
-build_vendor = apple
+build_cpu = i686
+build_os = linux-gnu
+build_vendor = pc
builddir = .
datadir = ${datarootdir}
datarootdir = ${prefix}/share
docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
dvidir = ${docdir}
exec_prefix = ${prefix}
-host = i386-apple-darwin9.8.0
+host = i686-pc-linux-gnu
host_alias =
-host_cpu = i386
-host_os = darwin9.8.0
-host_vendor = apple
+host_cpu = i686
+host_os = linux-gnu
+host_vendor = pc
htmldir = ${docdir}
includedir = ${prefix}/include
infodir = ${datarootdir}/info
-install_sh = $(SHELL) /Users/mholder/Documents/projects/ncl/working/ncl/branches/v2.1/config/install-sh
+install_sh = $(SHELL) /home/francois/Work/R-dev/phylobase/pkg/src/ncl/config/install-sh
libdir = ${exec_prefix}/lib
libexecdir = ${exec_prefix}/libexec
localedir = ${datarootdir}/locale
localstatedir = ${prefix}/var
-lt_ECHO = /bin/echo
+lt_ECHO = echo
mandir = ${datarootdir}/man
-mkdir_p = $(top_builddir)/config/install-sh -c -d
+mkdir_p = /bin/mkdir -p
oldincludedir = /usr/include
pdfdir = ${docdir}
-prefix = /usr/local
+prefix = /home/francois/Work/R-dev/phylobase/pkg/src/ncl/..
program_transform_name = s,x,x,
psdir = ${docdir}
sbindir = ${exec_prefix}/sbin
Deleted: pkg/src/ncl/test/NTSValidIn/._dzmissing_bug.nex
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Deleted: pkg/src/ncl/test/NTSValidIn/._notaxablock.nex
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Deleted: pkg/src/ncl/test/NTSValidIn/._treeswithouttaxa.nex
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Deleted: pkg/src/ncl/test/NTSValidOut/._dzmissing_bug.nex
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Deleted: pkg/src/ncl/test/NTSValidOut/._notaxablock.nex
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Deleted: pkg/src/ncl/test/NTSValidOut/._treeswithouttaxa.nex
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