[Phylobase-commits] r810 - pkg/inst/nexusfiles

[noreply at r-forge.r-project.org]

Author: francois
Date: 2010-08-06 21:31:00 +0200 (Fri, 06 Aug 2010)
New Revision: 810

Added:
   pkg/inst/nexusfiles/newick.tre
   pkg/inst/nexusfiles/noStateLabels.nex
Log:
a few more tree files for the unit tests

Added: pkg/inst/nexusfiles/newick.tre
===================================================================
--- pkg/inst/nexusfiles/newick.tre	                        (rev 0)
+++ pkg/inst/nexusfiles/newick.tre	2010-08-06 19:31:00 UTC (rev 810)
@@ -0,0 +1 @@
+(a:1,(b:2,c:3)xx:4)yy;
\ No newline at end of file

Added: pkg/inst/nexusfiles/noStateLabels.nex
===================================================================
--- pkg/inst/nexusfiles/noStateLabels.nex	                        (rev 0)
+++ pkg/inst/nexusfiles/noStateLabels.nex	2010-08-06 19:31:00 UTC (rev 810)
@@ -0,0 +1,36 @@
+#NEXUS
+
+BEGIN TAXA;
+	DIMENSIONS NTAX=4;
+	TAXLABELS
+		spA spB spC spD
+	;
+
+END;
+
+BEGIN TREES;
+	TRANSLATE
+	1 spA,
+	2 spB,
+	3 spC,
+	4 spD;
+   TREE testTree = (1,(2,(3,4)));
+END;
+
+BEGIN CHARACTERS;
+  TITLE 'TestStd';
+  DIMENSIONS NCHAR=3;
+  FORMAT DATATYPE = STANDARD
+    MISSING = ?
+    SYMBOLS = "0 1 2";
+  CHARSTATELABELS
+    1 char1,
+    2 char2,
+    3 char3;
+  MATRIX
+  spA 1 0 1
+  spB 2 1 0
+  spC 0 1 2
+  spD 1 2 0
+  ;
+END;