[Phylobase-commits] r596 - in pkg: R man

[noreply at r-forge.r-project.org]

Author: pdc
Date: 2009-08-26 20:36:51 +0200 (Wed, 26 Aug 2009)
New Revision: 596

Removed:
   pkg/R/identify.R
   pkg/man/identify-methods.Rd
Log:
Remove identify file, and documentation, hopefully not for long ...

Deleted: pkg/R/identify.R
===================================================================
--- pkg/R/identify.R	2009-08-26 02:09:03 UTC (rev 595)
+++ pkg/R/identify.R	2009-08-26 18:36:51 UTC (rev 596)
@@ -1,20 +0,0 @@
-## setGeneric("identify")
-##
-## setMethod("identify","phylo4",
-##            function(x,n=1,...) {
-##                plot(x, ...)
-##                last <- .last_plot.phylo # information return from plot.phylo
-##                N.tip <- nTips(x)
-##                N.node <- nNodes(x)
-##                tips <- tipLabels(x)
-##                if (!hasNodeLabels(x)) {
-##                    nodes <- (N.tip+1):(N.tip+N.node)
-##                } else nodes <- nodeLabels(x)
-##                labs<-c(rep("",N.tip), nodes)
-##                click <- identify(last$xx, last$yy, labels=labs, n=n)
-##                ##    if (click > N.tip) {
-##                ##    stop("this is a tip, you have to choose a node\n")
-##                ##}
-##                names(click) <- labs[click]
-##                return(click)
-##            })

Deleted: pkg/man/identify-methods.Rd
===================================================================
--- pkg/man/identify-methods.Rd	2009-08-26 02:09:03 UTC (rev 595)
+++ pkg/man/identify-methods.Rd	2009-08-26 18:36:51 UTC (rev 596)
@@ -1,23 +0,0 @@
-\name{identify-methods}
-\docType{methods}
-\alias{identify-methods}
-\alias{identify,phylo4-method}
-\title{Graphically identify nodes in a phylogeny}
-\description{
-  Plots a phylogeny and allows the user to click
-  on internal nodes to identify them
-}
-\section{Methods}{
-\describe{
-  \item{x = "phylo4"}{an object of class \code{phylo4}
-    (or extensions)}
-}}
-\usage{
-    \S4method{identify}{phylo4}(x, n=1, \dots)
-}
-\arguments{
-  \item{x}{a phylo4 object}
-  \item{n}{number of nodes to identify}
-  \item{\dots}{additional arguments (for generic compatibility)}
-  }
-\keyword{methods}