[Phylobase-commits] r578 - pkg/man

[noreply at r-forge.r-project.org]

Author: regetz
Date: 2009-08-24 23:35:46 +0200 (Mon, 24 Aug 2009)
New Revision: 578

Modified:
   pkg/man/as-methods.Rd
   pkg/man/phylo4-class.Rd
   pkg/man/phylo4d-class.Rd
   pkg/man/reorder-methods.Rd
Log:
minor typo fixes


Modified: pkg/man/as-methods.Rd
===================================================================
--- pkg/man/as-methods.Rd	2009-08-24 06:40:09 UTC (rev 577)
+++ pkg/man/as-methods.Rd	2009-08-24 21:35:46 UTC (rev 578)
@@ -45,7 +45,7 @@
   (\code{phylo4} or \code{phylo4d}), and objects used by other
   comparative methods packages in R:  \code{ape} objects (\code{phylo},
   \code{multiPhylo}), \code{ade4} objects (\code{phylog}), and to
-  \code{data.frame} respresentation.
+  \code{data.frame} representation.
 }
 
 \section{Methods}{
@@ -128,7 +128,7 @@
 tree_in_phylo <- tree.owls                  # tree is a phylo object
 (tree_in_phylo4 <- as(tree.owls,"phylo4"))  # phylo converted to phylo4
 identical(tree_in_phylo,as(tree_in_phylo4,"phylo"))
-## test if phylo, and phlyo4 converted to phylo are identical
+## test if phylo, and phylo4 converted to phylo are identical
 ## (no, because of dimnames)
 
 ## Conversion to phylog (ade4)

Modified: pkg/man/phylo4-class.Rd
===================================================================
--- pkg/man/phylo4-class.Rd	2009-08-24 06:40:09 UTC (rev 577)
+++ pkg/man/phylo4-class.Rd	2009-08-24 21:35:46 UTC (rev 578)
@@ -47,7 +47,7 @@
     \item{x}{a phylo4 object}
     \item{object}{a phylo4 object}
     \item{edgeOrder}{Character string indicating whether the edges should be printed
-      as ordered in the tree "real" (e.g. preoder or postorder), or "pretty" printed 
+      as ordered in the tree "real" (e.g. preorder or postorder), or "pretty" printed 
       with tips collated together}
     \item{printall}{If TRUE all tip labels are printed}
     \item{quiet}{a logical stating whether the results of the summary

Modified: pkg/man/phylo4d-class.Rd
===================================================================
--- pkg/man/phylo4d-class.Rd	2009-08-24 06:40:09 UTC (rev 577)
+++ pkg/man/phylo4d-class.Rd	2009-08-24 21:35:46 UTC (rev 578)
@@ -51,7 +51,7 @@
     \item{x}{a phylo4d object}
     \item{object}{a phylo4d object}
     \item{edgeOrder}{Character string indicating whether the edges should be printed
-      as ordered in the tree "real" (e.g. preoder or postorder), or "pretty" printed 
+      as ordered in the tree "real" (e.g. preorder or postorder), or "pretty" printed 
       with tips collated together}
     \item{printall}{If TRUE all tip labels are printed}
   }

Modified: pkg/man/reorder-methods.Rd
===================================================================
--- pkg/man/reorder-methods.Rd	2009-08-24 06:40:09 UTC (rev 577)
+++ pkg/man/reorder-methods.Rd	2009-08-24 21:35:46 UTC (rev 578)
@@ -34,7 +34,7 @@
 A method is also defined that takes an \code{ape phylo} object.  This also takes an order argument, however, 'pruningwise' and 'cladewise' are the only acceptable parameters.  This is because this method actually uses the \code{ape reorder()} command to complete the ordering.  
 }
 \value{
-A \code{phylo4} or \code{phylo4d} object with the edge, label, lenght and data slots ordered as \code{order}.
+A \code{phylo4} or \code{phylo4d} object with the edge, label, length and data slots ordered as \code{order}.
 }
 \author{Peter Cowan}
 \note{