[Phylobase-commits] r457 - branches/fm-branch/R

[noreply at r-forge.r-project.org]

Author: francois
Date: 2009-08-13 19:51:08 +0200 (Thu, 13 Aug 2009)
New Revision: 457

Modified:
   branches/fm-branch/R/checkdata.R
Log:
reverted to old behavior when tree/data mismatch, fix bug 546

Modified: branches/fm-branch/R/checkdata.R
===================================================================
--- branches/fm-branch/R/checkdata.R	2009-08-13 17:34:45 UTC (rev 456)
+++ branches/fm-branch/R/checkdata.R	2009-08-13 17:51:08 UTC (rev 457)
@@ -149,7 +149,7 @@
 
 formatData <- function(phy, dt, which=c("tip", "internal", "all"),
                        match.data=TRUE, label.type=c("rownames", "column"),
-                       label.column=1, missing.data=c("warn", "OK", "fail"),
+                       label.column=1, missing.data=c("fail", "warn", "OK"),
                        extra.data=c("warn", "OK", "fail")
                        ) {