[Phylobase-commits] r432 - pkg/man

[noreply at r-forge.r-project.org]

Author: pdc
Date: 2009-04-26 06:39:43 +0200 (Sun, 26 Apr 2009)
New Revision: 432

Modified:
   pkg/man/as-methods.Rd
   pkg/man/pdata.Rd
Log:
fixes to make the stricter R CMD check of 2.9.0 happy

Modified: pkg/man/as-methods.Rd
===================================================================
--- pkg/man/as-methods.Rd	2009-04-26 04:38:17 UTC (rev 431)
+++ pkg/man/as-methods.Rd	2009-04-26 04:39:43 UTC (rev 432)
@@ -45,7 +45,8 @@
   (\code{phylo}, \code{multiPhylo}) \code{ade4} objects (\code{phylog}), and to \code{data.frame} respresentation.
 }
 \section{Methods}{
-  \item{coerce}{from one object class to another using \code{as(object,"Class")}, where the \code{object} is of the old class and the returned object is of the new class \code{"Class"}. The \code{as} function examines the class of \code{object} and the new \code{"Class"} specified to choose the proper conversion without additional information from the user. Conversions exist for combinations:
+\describe{
+  \item{coerce}{from one object class to another using \code{as(object,"Class")}, where the \code{object} is of the old class and the returned object is of the new class \code{"Class"}. The \code{as} function examines the class of \code{object} and the new \code{"Class"} specified to choose the proper conversion without additional information from the user. Conversions exist for combinations:}
   \describe{
 
     \item{\code{phylobase} to \code{phylobase} formats:}{

Modified: pkg/man/pdata.Rd
===================================================================
--- pkg/man/pdata.Rd	2009-04-26 04:38:17 UTC (rev 431)
+++ pkg/man/pdata.Rd	2009-04-26 04:39:43 UTC (rev 432)
@@ -13,7 +13,7 @@
 }
 \arguments{
   \item{data}{a data frame}
-  \item{type}{a factor with levels as specified by \S4class{pdata},
+  \item{type}{a factor with levels as specified by \linkS4class{pdata},
   the same length as \code{ncol(data)}}
   \item{comment}{a character vector, the same length as \code{ncol(data)}}
   \item{metadata}{an arbitrary list}