[Phylobase-commits] r116 - pkg

[noreply at r-forge.r-project.org]

Author: jombart
Date: 2008-02-23 14:25:32 +0100 (Sat, 23 Feb 2008)
New Revision: 116

Modified:
   pkg/TODO
Log:
Updated TODO / plot section.


Modified: pkg/TODO
===================================================================
--- pkg/TODO	2008-02-23 11:55:17 UTC (rev 115)
+++ pkg/TODO	2008-02-23 13:25:32 UTC (rev 116)
@@ -11,12 +11,11 @@
 ## Plotting
 ### phylo4d objects
   * verify that identify works with this version -- [yes] TJ
-  * error in plotting a subsetted tree: see tests/plottest.R -- [no error but mistake in @node.label returned by 'subset'] TJ.
-  * modify phylo4 method to allow "Singles" (plot.phylo doesn't)?
-  * plotting with data and `show.node.label` scrambles order of node
-   labels *this is really a problem with ade4 vs ape ordering of nodes* -- [fixed since we no longer use ade4 for plotting] TJ
-  * plotting with subsetted data can throw error (see tests/plottest.R) -- [comes from 'subset', see above] TJ
+  * error in plotting a subsetted tree: see tests/plottest.R -- [fixed] TJ.
+  * modify phylo4 method to allow "Singles" (plot.phylo doesn't)? What are 'singles'? One single descendent for a node?
+  * plotting with data and `show.node.label` scrambles order of node labels *this is really a problem with ade4 vs ape ordering of nodes* -- [fixed since we no longer use ade4 for plotting] TJ
   * multiPhylo4x plotting
+  * plot the tree when no data are stored in a phylo4d instead of throwing an error
 
 ## Data classes
 ### Tree model: