[Pgfsweave-commits] r26 - in pkg: . inst/example

[noreply at r-forge.r-project.org]

Author: cameronbracken
Date: 2011-01-17 01:02:51 +0100 (Mon, 17 Jan 2011)
New Revision: 26

Added:
   pkg/OREADME.md
Removed:
   pkg/inst/example/pgfSweave-example.tex
Log:
Version 1.1.3 RC1 (missing files)

Merge branch 'master' into r-forge-local

Conflicts:
	inst/example/pgfSweave-example.tex

Added: pkg/OREADME.md
===================================================================
--- pkg/OREADME.md	                        (rev 0)
+++ pkg/OREADME.md	2011-01-17 00:02:51 UTC (rev 26)
@@ -0,0 +1,52 @@
+## RESOLVED (resolution in brackets)
+* latex/pdflatex is not found when using R.app (Mac OS X) unless path to 
+  pdflatex is hardcoded (but pgfSweave <file> works)
+  [put path to latex distro in .Rprofile (see vignette faq)]
+ 
+* Package currently generates a bash shell script to compile external 
+  graphics, which will not work in windows.
+  [This actually does work on windows if Rtools and MiKTeX are installed]
+ 
+* Using the 'pdf' option and 'external' option will conflict suggest using 
+  one or the other or possibly have a default when this is the case
+  [If pgf is TRUE it supercedes everything else]
+ 
+* output pdf size when included in document is refined by textwidth by 
+  default, need a feature to add the 'width' and 'height' and possibly and 
+  other option 'scale' the `\includegraphics[width=,height=,scale=]{file}`
+  [Use `\usepackage[nogin]{Sweave}`]
+ 
+* Vignette does not compile with R CMD {check,build,install} because file 
+  is not normal Sweave (Solution for the final document may just be to 
+  save images separately and create a standard Sweave file). For now 
+  vignette moved to `inst/doc/src`.
+  [Elaborate make file created in `inst/misc/vignette-source`, run make then 
+  make cleanforbuild before uploading]
+
+
+##DONE (old TODO items):
+
+* pgf graphics device.
+  [Started tikzDevice on r-forge]
+
+* Figure out how to fill the environment variable $R_HOME in 
+  exec/pgfSweave
+  [Irrelevant now, see next item]
+
+* Figure out how to call the script exec/pgfSweave when using R CMD 
+  pgfSweave
+  [Used a Makevars file to create symlink in $RHOME/bin, basically 
+  a much simplified version of Charlie's method]
+ 
+* Documentation has a boatload of warnings under R CMD check.
+
+* Figure out how to call eps2pgf.jar with the rJava package 
+  [scrapped for now, write a pgf graphics device!]
+ 
+* Determine the limitations R CMD pgfSweave.
+  [shell script pgfSweave in exec/ will do the same but using R CMD is not 
+  possible withoud a rewrite of the Rcmd script]
+ 
+* Determine if pgf 2.00 contains the external capabilities so that can be 
+  stated in the vignette and the documentation.
+  [must use at least pgf 2.00]

Deleted: pkg/inst/example/pgfSweave-example.tex
===================================================================
--- pkg/inst/example/pgfSweave-example.tex	2011-01-16 23:59:41 UTC (rev 25)
+++ pkg/inst/example/pgfSweave-example.tex	2011-01-17 00:02:51 UTC (rev 26)
@@ -1,424 +0,0 @@
-\documentclass{article}
-
-\usepackage{tikz}
-\usepackage[margin=1in]{geometry}
-\title{Minimal pgfSweave Example}
-\author{Cameron Bracken}    
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-\newcommand{\hlslc}[1]{\textcolor[rgb]{0.51,0.51,0.51}{\it{#1}}}
-\newcommand{\hlcom}[1]{\textcolor[rgb]{0.51,0.51,0.51}{\it{#1}}}
-\newcommand{\hldir}[1]{\textcolor[rgb]{0,0.51,0}{#1}}
-\newcommand{\hlsym}[1]{\textcolor[rgb]{0,0,0}{#1}}
-\newcommand{\hlline}[1]{\textcolor[rgb]{0.33,0.33,0.33}{#1}}
-\newcommand{\hlkwa}[1]{\textcolor[rgb]{0,0,0}{\bf{#1}}}
-\newcommand{\hlkwb}[1]{\textcolor[rgb]{0.51,0,0}{#1}}
-\newcommand{\hlkwc}[1]{\textcolor[rgb]{0,0,0}{\bf{#1}}}
-\newcommand{\hlkwd}[1]{\textcolor[rgb]{0,0,0.51}{#1}}
-
-\pgfrealjobname{pgfSweave-example}
-\usepackage{/Library/Frameworks/R.framework/Resources/share/texmf/tex/latex/Sweave}
-\begin{document}
-
-
-
-
-\maketitle
-This example is identical to that in the Sweave manual and is intended to 
-introduce pgfSweave and highlight the basic differences.  Please refer to 
-the pgfSweave vignette for more usage instructions. 
-
-We embed parts of the examples from the \texttt{kruskal.test} help page 
-into a \LaTeX{} document:
-
-\hspace*{\fill}\\
-\hlstd{}\ttfamily\noindent
-\hlprompt{\usebox{\hlnormalsizeboxgreaterthan}{\ }}{\ }{\ }\hlcomment{\usebox{\hlnormalsizeboxhash}{\ }{\ }{\ }{\ }{\ }hey,{\ }a{\ }comment}\mbox{}
-\normalfont
-\hspace*{\fill}\\
-\hlstd{}\ttfamily\noindent
-\hlprompt{\usebox{\hlnormalsizeboxgreaterthan}{\ }}\hlfunctioncall{data}\hlkeyword{(}\hlsymbol{airquality}\hlkeyword{)}\mbox{}
-\normalfont
-\hspace*{\fill}\\
-\hlstd{}\ttfamily\noindent
-\hlprompt{\usebox{\hlnormalsizeboxgreaterthan}{\ }}\hlfunctioncall{kruskal.test}\hlkeyword{(}\hlsymbol{Ozone}{\ }\hlkeyword{\urltilda{}}{\ }\hlsymbol{Month}\hlkeyword{,}{\ }\hlargument{data}{\ }\hlargument{=}{\ }\hlsymbol{airquality}\hlkeyword{)}\mbox{}
-\normalfont
-\hspace*{\fill}\\
-\hlstd{}
-
-\noindent which shows that the location parameter of the Ozone distribution varies 
-significantly from month to month. Finally we include a boxplot of the data:
-
-\begin{figure}[!ht]
-%notice the new options
-\hspace*{\fill}\\
-\hlstd{}\ttfamily\noindent
-\hlprompt{\usebox{\hlnormalsizeboxgreaterthan}{\ }}\hlfunctioncall{boxplot}\hlkeyword{(}\hlsymbol{Ozone}{\ }\hlkeyword{\urltilda{}}{\ }\hlsymbol{Month}\hlkeyword{,}{\ }\hlargument{data}{\ }\hlargument{=}{\ }\hlsymbol{airquality}\hlkeyword{,}{\ }\hlargument{main}{\ }\hlargument{=}{\ }\hlstring{"Ozone{\ }distribution"}\hlkeyword{,}\hspace*{\fill}\\
-\hlstd{}\hlprompt{+{\ }}{\ }{\ }{\ }{\ }\hlargument{xlab}{\ }\hlargument{=}{\ }\hlstring{"Month"}\hlkeyword{,}{\ }\hlargument{ylab}{\ }\hlargument{=}{\ }\hlstring{"Concentration"}\hlkeyword{)}\mbox{}
-\normalfont
-\hspace*{\fill}\\
-\hlstd{}
-
-
-\beginpgfgraphicnamed{pgfSweave-example-boxplot}
-\input{pgfSweave-example-boxplot.tikz}
-\endpgfgraphicnamed
-\caption{This is from pgfSweave. Text is typset by \LaTeX\ and so matches the
- font of the document.}
-\end{figure}
-
-
-\end{document}
-