[Pgfsweave-commits] r23 - in pkg: . R exec inst/doc inst/doc/figs inst/example inst/misc/vignette-src man src

noreply at r-forge.r-project.org noreply at r-forge.r-project.org
Sat Dec 18 01:05:09 CET 2010 

Author: cameronbracken
Date: 2010-12-18 01:05:08 +0100 (Sat, 18 Dec 2010)
New Revision: 23

Modified:
   pkg/ChangeLog
   pkg/DESCRIPTION
   pkg/R/pgfSweaveDriver.R
   pkg/exec/install-script.R
   pkg/inst/doc/figs/fig-normalSweave.pdf
   pkg/inst/doc/figs/fig-pgfSweave-hist.pdf
   pkg/inst/doc/figs/fig-pgfSweave-tikz-hist.pdf
   pkg/inst/doc/pgfSweave-example.pdf
   pkg/inst/doc/pgfSweave.Rnw
   pkg/inst/doc/pgfSweave.pdf
   pkg/inst/example/pgfSweave-example.Rnw
   pkg/inst/example/pgfSweave-example.tex
   pkg/inst/misc/vignette-src/pgfSweave-vignette-source.Rnw
   pkg/man/pgfSweaveDriver.Rd
   pkg/src/Makevars
Log:
Various bug fixes and maintainence

Modified: pkg/ChangeLog
===================================================================
--- pkg/ChangeLog	2010-11-29 11:41:13 UTC (rev 22)
+++ pkg/ChangeLog	2010-12-18 00:05:08 UTC (rev 23)
@@ -1,3 +1,58 @@
+commit 6aefd96107e78e2dbec3cd2e05d12e8a04bb44a2
+Author: cameronbracken <cameron.bracken at gmail.com>
+Date:   Fri Dec 3 11:42:37 2010 -0700
+
+    Actually make highlighting TRUE by default
+
+ ChangeLog                                          |   37 ++
+ R/pgfSweaveDriver.R                                |    4 +-
+ inst/doc/figs/fig-normalSweave.pdf                 |  Bin 2960 -> 2937 bytes
+ inst/doc/figs/fig-pgfSweave-hist.pdf               |  Bin 16275 -> 16182 bytes
+ inst/doc/figs/fig-pgfSweave-tikz-hist.pdf          |  Bin 26946 -> 26895 bytes
+ inst/doc/pgfSweave-example.pdf                     |  Bin 76205 -> 82901 bytes
+ inst/doc/pgfSweave.Rnw                             |  469 ++------------------
+ inst/doc/pgfSweave.pdf                             |  Bin 270239 -> 271887 bytes
+ .../vignette-src/pgfSweave-vignette-source.Rnw     |   11 +-
+ man/pgfSweaveDriver.Rd                             |    2 +-
+ 10 files changed, 85 insertions(+), 438 deletions(-)
+
+commit 185ce5677556e845293214973b45cd42c26977a5
+Author: cameronbracken <cameron.bracken at gmail.com>
+Date:   Mon Nov 29 04:36:59 2010 -0700
+
+    Updated README
+
+ README.md |   12 ------------
+ 1 files changed, 0 insertions(+), 12 deletions(-)
+
+commit d5bf42416de481c5855e84ae4af052bb41934c52
+Author: cameronbracken <cameron.bracken at gmail.com>
+Date:   Mon Nov 29 04:15:53 2010 -0700
+
+    Tidy functionality is now provided as an option that is disabled by default, also fix keep.source
+    
+    - Updated Vignette
+    - Updated NEWS for Version 1.1.0
+
+ ChangeLog                                          |   28 ++
+ DESCRIPTION                                        |    8 +-
+ NEWS                                               |    8 +-
+ R/pgfSweaveDriver.R                                |  116 ++-----
+ R/utilities.R                                      |   79 ++++
+ inst/doc/figs/fig-normalSweave.pdf                 |  Bin 2960 -> 2960 bytes
+ inst/doc/figs/fig-pgfSweave-hist.pdf               |  Bin 16287 -> 16275 bytes
+ inst/doc/figs/fig-pgfSweave-tikz-hist.pdf          |  Bin 26849 -> 26946 bytes
+ inst/doc/pgfSweave-example-Rnw.in                  |   12 +-
+ inst/doc/pgfSweave-example-tex.in                  |    7 +-
+ inst/doc/pgfSweave-example.pdf                     |  Bin 75856 -> 76205 bytes
+ inst/doc/pgfSweave.Rnw                             |   86 ++++-
+ inst/doc/pgfSweave.pdf                             |  Bin 262641 -> 270239 bytes
+ inst/example/pgfSweave-example.Rnw                 |   10 +-
+ inst/example/pgfSweave-example.tex                 |  413 +++++++++++++++++++-
+ .../vignette-src/pgfSweave-vignette-source.Rnw     |   69 +++-
+ man/pgfSweaveDriver.Rd                             |    7 +-
+ 17 files changed, 696 insertions(+), 147 deletions(-)
+
 commit 84540e92f3e2b185ec6cc5ed68cf3721e0e75475
 Author: cameronbracken <cameron.bracken at gmail.com>
 Date:   Mon Nov 29 00:24:19 2010 -0700

Modified: pkg/DESCRIPTION
===================================================================
--- pkg/DESCRIPTION	2010-11-29 11:41:13 UTC (rev 22)
+++ pkg/DESCRIPTION	2010-12-18 00:05:08 UTC (rev 23)
@@ -1,8 +1,8 @@
 Package: pgfSweave
 Type: Package
 Title: Quality speedy graphics compilation with Sweave
-Version: 1.1.0
-Date: 2010-11-17
+Version: 1.1.1
+Date: 2010-12-3
 Author: Cameron Bracken <cameron.bracken at gmail.com> and Charlie Sharpsteen <source at sharpsteen.net>
 Maintainer: Cameron Bracken <cameron.bracken at gmail.com> 
 Depends: stashR, filehash, tikzDevice, cacheSweave, getopt, highlight

Modified: pkg/R/pgfSweaveDriver.R
===================================================================
--- pkg/R/pgfSweaveDriver.R	2010-11-29 11:41:13 UTC (rev 22)
+++ pkg/R/pgfSweaveDriver.R	2010-12-18 00:05:08 UTC (rev 23)
@@ -42,7 +42,7 @@
               eval=TRUE, split=FALSE, stylepath=TRUE, 
               pdf=FALSE, eps=FALSE, cache=FALSE, pgf=FALSE, 
               tikz=TRUE, external=FALSE, sanitize = FALSE, 
-              highlight = FALSE, tidy = FALSE, tex.driver="pdflatex")
+              highlight = TRUE, tidy = FALSE, tex.driver="pdflatex")
 {
     out <- utils::RweaveLatexSetup(file, syntax, output=output, quiet=quiet,
                      debug=debug, echo=echo, eval=eval,
@@ -129,6 +129,8 @@
 
     # Copied from Sweave in R version 2.12, internal chages make it necessary
     # to register the tex.driver option as a "NOLOGOPT"
+    # This function checks for the \usepackage{Sweave} line and the 
+    # \pgfrealjobname line
 pgfSweaveWritedoc <- function(object, chunk)
 {
     linesout <- attr(chunk, "srclines")
@@ -213,7 +215,6 @@
                     "\\1", chunk[pos[1L]])
         object$options <- utils:::SweaveParseOptions(opts, object$options,
                                              pgfSweaveOptions)
-                                              browser()
         if (isTRUE(object$options$concordance)
               && !object$haveconcordance) {
             savelabel <- object$options$label

Modified: pkg/exec/install-script.R
===================================================================
--- pkg/exec/install-script.R	2010-11-29 11:41:13 UTC (rev 22)
+++ pkg/exec/install-script.R	2010-12-18 00:05:08 UTC (rev 23)
@@ -11,23 +11,31 @@
 abs_script <- file.path(Sys.getenv('R_PACKAGE_DIR'),
 	'exec','pgfsweave-script.R')
 
-script <- readLines(rel_script)
-win_shebang <- paste("#!",file.path(bindir,'Rscript'),sep='')
-win_script <- c( win_shebang, script)
+script <- try(readLines(rel_script),silent=T)
+if(class(script) == "try-error"){
+  
+  success <- FALSE
+  
+}else{
+  
+  win_shebang <- paste("#!",file.path(bindir,'Rscript'),sep='')
+  win_script <- c( win_shebang, script)
 
-success <- FALSE
+  success <- FALSE
 
-if( .Platform$OS.type == 'windows' ){
+  if( .Platform$OS.type == 'windows' ){
 	
-	tf <- tempfile()
-	writeLines( win_script, tf )
-	if(file.copy(tf,bin_script))
-		success <- TRUE
+  	tf <- tempfile()
+  	writeLines( win_script, tf )
+  	if(file.copy(tf,bin_script))
+  		success <- TRUE
 	
-}else{
-	if(file.symlink(abs_script,bin_script))
-		success <- TRUE
+  }else{
+  	if(file.symlink(abs_script,bin_script))
+  		success <- TRUE
 		
+  }
+  
 }
 
 if(success){
@@ -48,8 +56,8 @@
 	
 	cat('\n***********************\n')
 	cat('Failed to install custom pgfsweave script:\n')
-	cat('  Thats ok! You can manually install it later!\n')
-	cat('***********************\n')
+	cat('  Thats ok! You can manually install it later.\n')
+	cat('***********************\n\n')
 	
 }
 	

Modified: pkg/inst/doc/figs/fig-normalSweave.pdf
===================================================================
--- pkg/inst/doc/figs/fig-normalSweave.pdf	2010-11-29 11:41:13 UTC (rev 22)
+++ pkg/inst/doc/figs/fig-normalSweave.pdf	2010-12-18 00:05:08 UTC (rev 23)
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Modified: pkg/inst/doc/figs/fig-pgfSweave-hist.pdf
===================================================================
--- pkg/inst/doc/figs/fig-pgfSweave-hist.pdf	2010-11-29 11:41:13 UTC (rev 22)
+++ pkg/inst/doc/figs/fig-pgfSweave-hist.pdf	2010-12-18 00:05:08 UTC (rev 23)
@@ -1,22 +1,22 @@
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Modified: pkg/inst/doc/figs/fig-pgfSweave-tikz-hist.pdf
===================================================================
--- pkg/inst/doc/figs/fig-pgfSweave-tikz-hist.pdf	2010-11-29 11:41:13 UTC (rev 22)
+++ pkg/inst/doc/figs/fig-pgfSweave-tikz-hist.pdf	2010-12-18 00:05:08 UTC (rev 23)
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-i¥êIrKêΦqA.r-â8Z*¥ho•¿JÒù.ÈêW¤EÍ\ph¨Õ!›N&ó°p*_nôÝ/41ûÍ<«T:Pµ¡™¦ã»ünÖaS&ãÊ-Ó Àªœ™3›%:Þ6>Áœ³›λŠyƒ½ÌEßi-{ßÒDL¤He`™©ñë«Dàã*ðÇ›mÓ‚~Þ{¢a~Š™$f;
-õÂE  ˆe
-ñº1Í)›f"XK‰¸DÝ,£ÏëõØ,³—H¶ô`'Y®áKnÿóy ïGù‡ã·®~,÷½_•íŠÒÎ-MüÓE»$·â»Sy?Úµìpg†½¡O†PÿFçíoÚÓ‰ î¨Ò«¢¶%ôË+⨮›ôí1* 8ÏŒ<A¥{Ç,Ë.167'ÔžYeÍ«õ“»ô,vÊ ¥eÕƒ–ÇLË›ÕpԍÙecÝpCðû•ÇvKûxíÞÑ:žìH¢'2³ êÌqê;ú¹”žxMÑ/¾QëÉ(ÿ9ëb.Ÿš•úÊÊe©
-—:f•eɆ§-»2íˆæÆ“°gîSM¾:hÁâyõ<|.´D)î²ç™†ÀUb2ígÊ8­—Í–ºe::ðLYÌTwrʦVKôõ]4?´£Ø•ûK³|\Â<fîI¿~¸É¢[׋˜RËíøúàà8ÍïÂm¬ø6`=%ºun¬ó8Ÿ&\ÈÃ܇žƒ¯&°¯$PG…øeƒK dgN¹Þ›EN„dízdŒÏBïJI0¬%Á@ÿœØ«›8¼Ô@?EUo¡ÚO¦dìšjìs¦Mç~‰5ëñ×¹³óuQcŽ¾ãÀ¥zƒ<¢
-	þDÈÄiÙÃj`ÎÝœã·w?kÚŽÕ¨™f2ߟiÝ~‘mÏ2aƒÿµ­qnÍÌxì~Ç9QÖ-§¤0n$ÔéX ‚~Ç†"PÇ€ŽÇŽEê=M§Oƒ—Õ‚SGÓÊìôi?ÔM'"Ï $͏Ô
-¶Jë)0¬ƒ·‰¶‹ô¥D%›÷·>ˆUóÿ”¨"8°Ã‹¦ÃÒQ(9ÂÏ
-âTsUá»\€?HP¡:w‹d‹…石1s¿A at WÙ…ÈU5äù+2×+Só|÷ø„§¢ùkßçWw*l”ÄNöÓrÀ˜
-µH*[*µ›ŽGg˜Àw¥vk”_â|QãJD`*¨Ì•zëÅbÑtÖW¼(P~¨
-ÀÙ
-%YöÝë»+ ‘-UxÐ"(BB¢0b»~.ãÍn`+Yn
-¿Ô¦ìnCf¤ì;‹ÖiŽ‡\MRª–6M2ìÏOz´ëUμŽWÍì®>§jÍ7Šžm~Œ¶Ì¢B9šÊº‰?Ø t/{Ql­*d%Šïòi¿Â¢UÎÆ!6bÀœ/'Ù½°ìÇÌ!Eú!"úÁª…
[TRUNCATED]

To get the complete diff run:
    svnlook diff /svnroot/pgfsweave -r 23

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