[Patchwork-commits] r188 - www

[noreply at r-forge.r-project.org]

Author: sebastian_d
Date: 2013-09-05 09:39:10 +0200 (Thu, 05 Sep 2013)
New Revision: 188

Modified:
   www/TAPS_requ.php
Log:
update information on homepage regarding segmentation options for taps data

Modified: www/TAPS_requ.php
===================================================================
--- www/TAPS_requ.php	2013-08-22 15:01:46 UTC (rev 187)
+++ www/TAPS_requ.php	2013-09-05 07:39:10 UTC (rev 188)
@@ -13,11 +13,12 @@
 Using Nexus has the benefit of being able to use their segmentation which reduces running time of TAPS.
 <br /><br />
 
-If you have used <b>Nexus</b>, use "File -> Utilities -> Export from .ivg to.txt" to create "probes.txt",
+If you have used <b>Nexus</b>; we recommend using the SNPRank segmentation algorithm as it is
+CBS based rather than HMM, then use "File -> Utilities -> Export from .ivg to.txt" to create "probes.txt",
  "snps.txt" and "segments.txt". These should be in a sample folder, which is what TAPS takes as input.
 <br /><br />
 
-If you have used <b>ChAS</b>, load the file ending in "cyhd.cychp" into ChAS and create the text file ending in "cyhd.txt"
+If you have used <b>ChAS</b>; load the file ending in "cyhd.cychp" into ChAS and create the text file ending in "cyhd.txt"
 by choosing <b>Reports</b> menu and selecting <b>Export genotype results text file</b>. Then locate the samples folder,
 which is what TAPS takes as input. It should now contain two files ending in "cyhd.txt" and "cyhd.cychp".
 <br /><br />