[Patchwork-commits] r159 - .git .git/logs .git/logs/refs/heads .git/logs/refs/remotes/origin .git/refs/heads .git/refs/remotes/origin pkg/patchwork/R pkg/patchworkCG/R

[noreply at r-forge.r-project.org]

Author: sebastian_d
Date: 2013-01-24 15:34:48 +0100 (Thu, 24 Jan 2013)
New Revision: 159

Modified:
   .git/COMMIT_EDITMSG
   .git/index
   .git/logs/HEAD
   .git/logs/refs/heads/master
   .git/logs/refs/remotes/origin/master
   .git/refs/heads/master
   .git/refs/remotes/origin/master
   pkg/patchwork/R/karyotype.r
   pkg/patchworkCG/R/CG_karyotype.r
Log:
updated size of cex for karyotype plot to make the small pictures more interpretable

Modified: .git/COMMIT_EDITMSG
===================================================================
--- .git/COMMIT_EDITMSG	2013-01-22 15:38:54 UTC (rev 158)
+++ .git/COMMIT_EDITMSG	2013-01-24 14:34:48 UTC (rev 159)
@@ -1 +1 @@
-minor update
+updates size of cex for karyotype plot to make the small pictures more interpretable

Modified: .git/index
===================================================================
(Binary files differ)

Modified: .git/logs/HEAD
===================================================================
--- .git/logs/HEAD	2013-01-22 15:38:54 UTC (rev 158)
+++ .git/logs/HEAD	2013-01-24 14:34:48 UTC (rev 159)
@@ -26,3 +26,5 @@
 684bd069c85e2e51e3e570ea00e9b586993e694b 53e574e96950a119539b737b489262ce265a1c72 Sebastian DiLorenzo <dilorenzo.sebastian at gmail.com> 1357296550 +0100	commit: some documentation updates aswell as homepage updates
 53e574e96950a119539b737b489262ce265a1c72 c39f1b06a56367684e8062040df7214da6a79455 Sebastian DiLorenzo <dilorenzo.sebastian at gmail.com> 1358770531 +0100	commit: uncomment of line to generate normalalf
 c39f1b06a56367684e8062040df7214da6a79455 8d49ce11a9941d73d7be44948f908a139958e029 Sebastian DiLorenzo <dilorenzo.sebastian at gmail.com> 1358776614 +0100	commit: minor update
+8d49ce11a9941d73d7be44948f908a139958e029 4577fee5ce0968b311fa252e9df8fba284522e5d Sebastian DiLorenzo <dilorenzo.sebastian at gmail.com> 1358869240 +0100	commit: removed antique from bugfixing in patchworkCG
+4577fee5ce0968b311fa252e9df8fba284522e5d a75b0350402a356de4d9991f66d7fd1bc785a46f Sebastian DiLorenzo <dilorenzo.sebastian at gmail.com> 1359037334 +0100	commit: updates size of cex for karyotype plot to make the small pictures more interpretable

Modified: .git/logs/refs/heads/master
===================================================================
--- .git/logs/refs/heads/master	2013-01-22 15:38:54 UTC (rev 158)
+++ .git/logs/refs/heads/master	2013-01-24 14:34:48 UTC (rev 159)
@@ -26,3 +26,5 @@
 684bd069c85e2e51e3e570ea00e9b586993e694b 53e574e96950a119539b737b489262ce265a1c72 Sebastian DiLorenzo <dilorenzo.sebastian at gmail.com> 1357296550 +0100	commit: some documentation updates aswell as homepage updates
 53e574e96950a119539b737b489262ce265a1c72 c39f1b06a56367684e8062040df7214da6a79455 Sebastian DiLorenzo <dilorenzo.sebastian at gmail.com> 1358770531 +0100	commit: uncomment of line to generate normalalf
 c39f1b06a56367684e8062040df7214da6a79455 8d49ce11a9941d73d7be44948f908a139958e029 Sebastian DiLorenzo <dilorenzo.sebastian at gmail.com> 1358776614 +0100	commit: minor update
+8d49ce11a9941d73d7be44948f908a139958e029 4577fee5ce0968b311fa252e9df8fba284522e5d Sebastian DiLorenzo <dilorenzo.sebastian at gmail.com> 1358869240 +0100	commit: removed antique from bugfixing in patchworkCG
+4577fee5ce0968b311fa252e9df8fba284522e5d a75b0350402a356de4d9991f66d7fd1bc785a46f Sebastian DiLorenzo <dilorenzo.sebastian at gmail.com> 1359037334 +0100	commit: updates size of cex for karyotype plot to make the small pictures more interpretable

Modified: .git/logs/refs/remotes/origin/master
===================================================================
--- .git/logs/refs/remotes/origin/master	2013-01-22 15:38:54 UTC (rev 158)
+++ .git/logs/refs/remotes/origin/master	2013-01-24 14:34:48 UTC (rev 159)
@@ -26,3 +26,5 @@
 684bd069c85e2e51e3e570ea00e9b586993e694b 53e574e96950a119539b737b489262ce265a1c72 Sebastian DiLorenzo <dilorenzo.sebastian at gmail.com> 1357296561 +0100	update by push
 53e574e96950a119539b737b489262ce265a1c72 c39f1b06a56367684e8062040df7214da6a79455 Sebastian DiLorenzo <dilorenzo.sebastian at gmail.com> 1358770546 +0100	update by push
 c39f1b06a56367684e8062040df7214da6a79455 8d49ce11a9941d73d7be44948f908a139958e029 Sebastian DiLorenzo <dilorenzo.sebastian at gmail.com> 1358776628 +0100	update by push
+8d49ce11a9941d73d7be44948f908a139958e029 4577fee5ce0968b311fa252e9df8fba284522e5d Sebastian DiLorenzo <dilorenzo.sebastian at gmail.com> 1358869254 +0100	update by push
+4577fee5ce0968b311fa252e9df8fba284522e5d a75b0350402a356de4d9991f66d7fd1bc785a46f Sebastian DiLorenzo <dilorenzo.sebastian at gmail.com> 1359037348 +0100	update by push

Modified: .git/refs/heads/master
===================================================================
--- .git/refs/heads/master	2013-01-22 15:38:54 UTC (rev 158)
+++ .git/refs/heads/master	2013-01-24 14:34:48 UTC (rev 159)
@@ -1 +1 @@
-8d49ce11a9941d73d7be44948f908a139958e029
+a75b0350402a356de4d9991f66d7fd1bc785a46f

Modified: .git/refs/remotes/origin/master
===================================================================
--- .git/refs/remotes/origin/master	2013-01-22 15:38:54 UTC (rev 158)
+++ .git/refs/remotes/origin/master	2013-01-24 14:34:48 UTC (rev 159)
@@ -1 +1 @@
-8d49ce11a9941d73d7be44948f908a139958e029
+a75b0350402a356de4d9991f66d7fd1bc785a46f

Modified: pkg/patchwork/R/karyotype.r
===================================================================
--- pkg/patchwork/R/karyotype.r	2013-01-22 15:38:54 UTC (rev 158)
+++ pkg/patchwork/R/karyotype.r	2013-01-24 14:34:48 UTC (rev 159)
@@ -25,8 +25,8 @@
     
     	size=rep(0.5,length(chr))
     	size[length>2000000]=1
-    	size[length>5000000]=2
-    	size[length>10000000]=3
+    	size[length>5000000]=1.5
+    	size[length>10000000]=2
  
     
     	for (c in 1:24) 

Modified: pkg/patchworkCG/R/CG_karyotype.r
===================================================================
--- pkg/patchworkCG/R/CG_karyotype.r	2013-01-22 15:38:54 UTC (rev 158)
+++ pkg/patchworkCG/R/CG_karyotype.r	2013-01-24 14:34:48 UTC (rev 159)
@@ -27,11 +27,11 @@
     	length=end-start
     
     size=rep(0.5,length(chr))
-    size[length>1000000]=1
-    size[length>3000000]=2
-    size[length>5000000]=3
-    size[length>10000000]=4
-    size[length>20000000]=5
+    size[length>1000000]=0.5
+    size[length>3000000]=1
+    size[length>5000000]=1.5
+    size[length>10000000]=2
+    size[length>20000000]=2.5
  
     
     	for (c in 1:24)