[Patchwork-commits] r153 - .git .git/logs .git/logs/refs/heads .git/logs/refs/remotes/origin .git/refs/heads .git/refs/remotes/origin pkg/patchwork/R

[noreply at r-forge.r-project.org]

Author: sebastian_d
Date: 2012-11-30 11:54:10 +0100 (Fri, 30 Nov 2012)
New Revision: 153

Modified:
   .git/COMMIT_EDITMSG
   .git/index
   .git/logs/HEAD
   .git/logs/refs/heads/master
   .git/logs/refs/remotes/origin/master
   .git/refs/heads/master
   .git/refs/remotes/origin/master
   pkg/patchwork/R/patchwork.plot.r
Log:
more fixes regarding assignAI

Modified: .git/COMMIT_EDITMSG
===================================================================
--- .git/COMMIT_EDITMSG	2012-11-30 09:23:03 UTC (rev 152)
+++ .git/COMMIT_EDITMSG	2012-11-30 10:54:10 UTC (rev 153)
@@ -1 +1 @@
-Commented out assignAI which shouldent have been in use from patchwork
+more fixes regarding assignAI

Modified: .git/index
===================================================================
(Binary files differ)

Modified: .git/logs/HEAD
===================================================================
--- .git/logs/HEAD	2012-11-30 09:23:03 UTC (rev 152)
+++ .git/logs/HEAD	2012-11-30 10:54:10 UTC (rev 153)
@@ -21,3 +21,4 @@
 53fb1e3cd198d3f12e30ab52891a42e19f5bfdfc 121e1229bbfdb5e93aea7268469f568c16388ada Sebastian DiLorenzo <dilorenzo.sebastian at gmail.com> 1352909758 +0100	commit: updates to homepage regarding mpileup,vcfs and filtering
 121e1229bbfdb5e93aea7268469f568c16388ada ac036caf16d37514a79e980f6da0e562c404bf57 Sebastian DiLorenzo <dilorenzo.sebastian at gmail.com> 1352983874 +0100	commit: small homepage changes
 ac036caf16d37514a79e980f6da0e562c404bf57 eb98d72bfc02cfe4a0b30f1a2a0a64107444e40a Sebastian DiLorenzo <dilorenzo.sebastian at gmail.com> 1354267289 +0100	commit: Commented out assignAI which shouldent have been in use from patchwork
+eb98d72bfc02cfe4a0b30f1a2a0a64107444e40a c7cdeb76a91652d654a622c343d9d40a38d673bb Sebastian DiLorenzo <dilorenzo.sebastian at gmail.com> 1354272864 +0100	commit: more fixes regarding assignAI

Modified: .git/logs/refs/heads/master
===================================================================
--- .git/logs/refs/heads/master	2012-11-30 09:23:03 UTC (rev 152)
+++ .git/logs/refs/heads/master	2012-11-30 10:54:10 UTC (rev 153)
@@ -21,3 +21,4 @@
 53fb1e3cd198d3f12e30ab52891a42e19f5bfdfc 121e1229bbfdb5e93aea7268469f568c16388ada Sebastian DiLorenzo <dilorenzo.sebastian at gmail.com> 1352909758 +0100	commit: updates to homepage regarding mpileup,vcfs and filtering
 121e1229bbfdb5e93aea7268469f568c16388ada ac036caf16d37514a79e980f6da0e562c404bf57 Sebastian DiLorenzo <dilorenzo.sebastian at gmail.com> 1352983874 +0100	commit: small homepage changes
 ac036caf16d37514a79e980f6da0e562c404bf57 eb98d72bfc02cfe4a0b30f1a2a0a64107444e40a Sebastian DiLorenzo <dilorenzo.sebastian at gmail.com> 1354267289 +0100	commit: Commented out assignAI which shouldent have been in use from patchwork
+eb98d72bfc02cfe4a0b30f1a2a0a64107444e40a c7cdeb76a91652d654a622c343d9d40a38d673bb Sebastian DiLorenzo <dilorenzo.sebastian at gmail.com> 1354272864 +0100	commit: more fixes regarding assignAI

Modified: .git/logs/refs/remotes/origin/master
===================================================================
--- .git/logs/refs/remotes/origin/master	2012-11-30 09:23:03 UTC (rev 152)
+++ .git/logs/refs/remotes/origin/master	2012-11-30 10:54:10 UTC (rev 153)
@@ -21,3 +21,4 @@
 53fb1e3cd198d3f12e30ab52891a42e19f5bfdfc 121e1229bbfdb5e93aea7268469f568c16388ada Sebastian DiLorenzo <dilorenzo.sebastian at gmail.com> 1352909786 +0100	update by push
 121e1229bbfdb5e93aea7268469f568c16388ada ac036caf16d37514a79e980f6da0e562c404bf57 Sebastian DiLorenzo <dilorenzo.sebastian at gmail.com> 1352983892 +0100	update by push
 ac036caf16d37514a79e980f6da0e562c404bf57 eb98d72bfc02cfe4a0b30f1a2a0a64107444e40a Sebastian DiLorenzo <dilorenzo.sebastian at gmail.com> 1354267311 +0100	update by push
+eb98d72bfc02cfe4a0b30f1a2a0a64107444e40a c7cdeb76a91652d654a622c343d9d40a38d673bb Sebastian DiLorenzo <dilorenzo.sebastian at gmail.com> 1354272883 +0100	update by push

Modified: .git/refs/heads/master
===================================================================
--- .git/refs/heads/master	2012-11-30 09:23:03 UTC (rev 152)
+++ .git/refs/heads/master	2012-11-30 10:54:10 UTC (rev 153)
@@ -1 +1 @@
-eb98d72bfc02cfe4a0b30f1a2a0a64107444e40a
+c7cdeb76a91652d654a622c343d9d40a38d673bb

Modified: .git/refs/remotes/origin/master
===================================================================
--- .git/refs/remotes/origin/master	2012-11-30 09:23:03 UTC (rev 152)
+++ .git/refs/remotes/origin/master	2012-11-30 10:54:10 UTC (rev 153)
@@ -1 +1 @@
-eb98d72bfc02cfe4a0b30f1a2a0a64107444e40a
+c7cdeb76a91652d654a622c343d9d40a38d673bb

Modified: pkg/patchwork/R/patchwork.plot.r
===================================================================
--- pkg/patchwork/R/patchwork.plot.r	2012-11-30 09:23:03 UTC (rev 152)
+++ pkg/patchwork/R/patchwork.plot.r	2012-11-30 10:54:10 UTC (rev 153)
@@ -123,12 +123,12 @@
 			cat("Segmentation Complete \n")
 			}
 
-		#Assign AI to kbsegs. (not in use atm)
+		#Assign AI to kbsegs. (not in use atm)   ---MARKUS ---
 		#object = assignAI(alf$achr,alf$apos,alf$amin,alf$amax,
 		#kbsegs$chr,(kbsegs$pos-5000),(kbsegs$pos+5000))
 
-		kbsegs = cbind(kbsegs[,1:5],object[,4])
-		colnames(kbsegs)=c("chr","pos","coverage","refcoverage","ratio","ai")
+		#kbsegs = cbind(kbsegs[,1:5],object[,4])
+		#colnames(kbsegs)=c("chr","pos","coverage","refcoverage","ratio","ai")
 		
 		if(length(segs) == 6)
 			{