[Patchwork-commits] r131 - pkg/patchwork/inst www

[noreply at r-forge.r-project.org]

Author: sebastian_d
Date: 2012-05-04 14:48:22 +0200 (Fri, 04 May 2012)
New Revision: 131

Modified:
   pkg/patchwork/inst/README
   www/pw_requ.php
Log:
Updated that you should use samtools 0.1.16 or older, previously it wrongly said that you could use 0.1.18 or older

Modified: pkg/patchwork/inst/README
===================================================================
--- pkg/patchwork/inst/README	2012-05-02 15:03:57 UTC (rev 130)
+++ pkg/patchwork/inst/README	2012-05-04 12:48:22 UTC (rev 131)
@@ -55,7 +55,7 @@
 
 At the time of writing there should be several places you can find this; The Sanger institute, 1000genomes project etc. You probably already have one as you needed one previously for the alignment of your tumor sequence.
 
-Use SAMtools, version 0.1.18 or older, to produce the pileup:
+Use SAMtools, version 0.1.16 or older, to produce the pileup:
 	"samtools pileup -vcf <reference.fasta> <yourfile>.bam > <yourpileup>"
 
 The pileup should have this format:

Modified: www/pw_requ.php
===================================================================
--- www/pw_requ.php	2012-05-02 15:03:57 UTC (rev 130)
+++ www/pw_requ.php	2012-05-04 12:48:22 UTC (rev 131)
@@ -88,7 +88,7 @@
 Many of the tasks that you will need to perform can be achieved using 
 <a href="http://sourceforge.net/projects/samtools/files/" target="_blank" style="text-decoration:none;">
 	SAMtools</a>. </br>
-It is of special importance that you install a version of SAMtools older than 0.1.18 or the pileup generated will
+It is of special importance that you install SAMtools version 0.1.16 or older or the pileup generated will
 have an incorrect format.<br />
 An example of the correct format of your pileup file is included below. <br /><br />