[Patchwork-commits] r145 - .git .git/logs .git/logs/refs/heads .git/logs/refs/remotes/origin .git/refs/heads .git/refs/remotes/origin pkg/patchwork/man www

[noreply at r-forge.r-project.org]

Author: sebastian_d
Date: 2012-06-29 16:21:47 +0200 (Fri, 29 Jun 2012)
New Revision: 145

Modified:
   .git/COMMIT_EDITMSG
   .git/index
   .git/logs/HEAD
   .git/logs/refs/heads/master
   .git/logs/refs/remotes/origin/master
   .git/refs/heads/master
   .git/refs/remotes/origin/master
   pkg/patchwork/man/patchwork.plot.Rd
   www/pw_exec.php
Log:
update homepage error regarding patchwork.copynumbers

Modified: .git/COMMIT_EDITMSG
===================================================================
--- .git/COMMIT_EDITMSG	2012-06-29 11:50:31 UTC (rev 144)
+++ .git/COMMIT_EDITMSG	2012-06-29 14:21:47 UTC (rev 145)
@@ -1 +1 @@
-recommitting project
+update changelog post recommit

Modified: .git/index
===================================================================
(Binary files differ)

Modified: .git/logs/HEAD
===================================================================
--- .git/logs/HEAD	2012-06-29 11:50:31 UTC (rev 144)
+++ .git/logs/HEAD	2012-06-29 14:21:47 UTC (rev 145)
@@ -1 +1,2 @@
 0000000000000000000000000000000000000000 6980fef84a3043d074fe5e46a935b84815d90e03 Sebastian DiLorenzo <dilorenzo.sebastian at gmail.com> 1340969996 +0200	commit (initial): recommitting project
+6980fef84a3043d074fe5e46a935b84815d90e03 693c0c176e7aaf19c80e78373ef88877e785cd91 Sebastian DiLorenzo <dilorenzo.sebastian at gmail.com> 1340970681 +0200	commit: update changelog post recommit

Modified: .git/logs/refs/heads/master
===================================================================
--- .git/logs/refs/heads/master	2012-06-29 11:50:31 UTC (rev 144)
+++ .git/logs/refs/heads/master	2012-06-29 14:21:47 UTC (rev 145)
@@ -1 +1,2 @@
 0000000000000000000000000000000000000000 6980fef84a3043d074fe5e46a935b84815d90e03 Sebastian DiLorenzo <dilorenzo.sebastian at gmail.com> 1340969996 +0200	commit (initial): recommitting project
+6980fef84a3043d074fe5e46a935b84815d90e03 693c0c176e7aaf19c80e78373ef88877e785cd91 Sebastian DiLorenzo <dilorenzo.sebastian at gmail.com> 1340970681 +0200	commit: update changelog post recommit

Modified: .git/logs/refs/remotes/origin/master
===================================================================
--- .git/logs/refs/remotes/origin/master	2012-06-29 11:50:31 UTC (rev 144)
+++ .git/logs/refs/remotes/origin/master	2012-06-29 14:21:47 UTC (rev 145)
@@ -1 +1,2 @@
 0000000000000000000000000000000000000000 6980fef84a3043d074fe5e46a935b84815d90e03 Sebastian DiLorenzo <dilorenzo.sebastian at gmail.com> 1340970343 +0200	update by push
+6980fef84a3043d074fe5e46a935b84815d90e03 693c0c176e7aaf19c80e78373ef88877e785cd91 Sebastian DiLorenzo <dilorenzo.sebastian at gmail.com> 1340970693 +0200	update by push

Modified: .git/refs/heads/master
===================================================================
--- .git/refs/heads/master	2012-06-29 11:50:31 UTC (rev 144)
+++ .git/refs/heads/master	2012-06-29 14:21:47 UTC (rev 145)
@@ -1 +1 @@
-6980fef84a3043d074fe5e46a935b84815d90e03
+693c0c176e7aaf19c80e78373ef88877e785cd91

Modified: .git/refs/remotes/origin/master
===================================================================
--- .git/refs/remotes/origin/master	2012-06-29 11:50:31 UTC (rev 144)
+++ .git/refs/remotes/origin/master	2012-06-29 14:21:47 UTC (rev 145)
@@ -1 +1 @@
-6980fef84a3043d074fe5e46a935b84815d90e03
+693c0c176e7aaf19c80e78373ef88877e785cd91

Modified: pkg/patchwork/man/patchwork.plot.Rd
===================================================================
--- pkg/patchwork/man/patchwork.plot.Rd	2012-06-29 11:50:31 UTC (rev 144)
+++ pkg/patchwork/man/patchwork.plot.Rd	2012-06-29 14:21:47 UTC (rev 145)
@@ -24,7 +24,7 @@
 
 \arguments{
   \item{BamFile}{
-  	Aligned, Sorted Bam-file.
+  	Path to an aligned and sorted Bam-file.
 	}
   \item{Pileup}{
 	Pileup file generated through 

Modified: www/pw_exec.php
===================================================================
--- www/pw_exec.php	2012-06-29 11:50:31 UTC (rev 144)
+++ www/pw_exec.php	2012-06-29 14:21:47 UTC (rev 145)
@@ -268,7 +268,7 @@
 An example run of patchwork.copynumbers(): <br />
 
 <pre>
-	patchwork.copynumbers(cn2=0.8, delta=0.28, het=0.21, hom=0.79)
+	patchwork.copynumbers(CNFile="path/to/prefix_copynumbers.Rdata",cn2=0.8, delta=0.28, het=0.21, hom=0.79)
 </pre>
 
 This will generate an additional set of plots in your working directory. <br /><br />