[Patchwork-commits] r76 - in pkg/patchworkCG: . R example_plots

[noreply at r-forge.r-project.org]

Author: sebastian_d
Date: 2012-01-25 17:14:28 +0100 (Wed, 25 Jan 2012)
New Revision: 76

Added:
   pkg/patchworkCG/example_plots/
   pkg/patchworkCG/example_plots/HCC2218__KaChCN_chr1.png
   pkg/patchworkCG/example_plots/HCC2218__KaCh_chr1.png
   pkg/patchworkCG/example_plots/HCC2218__Ka_check.png
Modified:
   pkg/patchworkCG/R/CG_KaCh.r
   pkg/patchworkCG/R/CG_KaChCN.r
   pkg/patchworkCG/R/CG_Ka_check.r
   pkg/patchworkCG/R/CG_karyotype.r
   pkg/patchworkCG/R/patchwork.CG.r
Log:
last commit before london

Modified: pkg/patchworkCG/R/CG_KaCh.r
===================================================================
--- pkg/patchworkCG/R/CG_KaCh.r	2012-01-25 15:58:39 UTC (rev 75)
+++ pkg/patchworkCG/R/CG_KaCh.r	2012-01-25 16:14:28 UTC (rev 76)
@@ -117,7 +117,5 @@
             	
     	dev.off()
     	}
+    rm(ideogram)
 	}
-#library(patchworkCG)
-#load("CG.Rdata")
-#name = "C2_"
\ No newline at end of file

Modified: pkg/patchworkCG/R/CG_KaChCN.r
===================================================================
--- pkg/patchworkCG/R/CG_KaChCN.r	2012-01-25 15:58:39 UTC (rev 75)
+++ pkg/patchworkCG/R/CG_KaChCN.r	2012-01-25 16:14:28 UTC (rev 76)
@@ -132,4 +132,5 @@
         	axis(2,cex.axis=2)
         dev.off()
     	}
+     rm(ideogram)
 	}
\ No newline at end of file

Modified: pkg/patchworkCG/R/CG_Ka_check.r
===================================================================
--- pkg/patchworkCG/R/CG_Ka_check.r	2012-01-25 15:58:39 UTC (rev 75)
+++ pkg/patchworkCG/R/CG_Ka_check.r	2012-01-25 16:14:28 UTC (rev 76)
@@ -65,4 +65,5 @@
         	cex=2)
     
     dev.off()
+    rm(ideogram)
 	}

Modified: pkg/patchworkCG/R/CG_karyotype.r
===================================================================
--- pkg/patchworkCG/R/CG_karyotype.r	2012-01-25 15:58:39 UTC (rev 75)
+++ pkg/patchworkCG/R/CG_karyotype.r	2012-01-25 16:14:28 UTC (rev 76)
@@ -61,6 +61,7 @@
 			par(new=F)  
     		}
     dev.off()
+    rm(ideogram)
 	}
 
 

Modified: pkg/patchworkCG/R/patchwork.CG.r
===================================================================
--- pkg/patchworkCG/R/patchwork.CG.r	2012-01-25 15:58:39 UTC (rev 75)
+++ pkg/patchworkCG/R/patchwork.CG.r	2012-01-25 16:14:28 UTC (rev 76)
@@ -280,5 +280,5 @@
 					mastervar$chr,mastervar$begin,
 					name=name,xlim=c(0,2.4),ylim=c(0,1))
 	cat("Plotting Complete \n")
-	cat("patchwork.CG Complete \n Please read documentation on running patchwork.CGCNV \n")
+	cat("patchwork.CG Complete","\n","Please read documentation on running patchwork.CGCNV \n")
 	}
\ No newline at end of file

Added: pkg/patchworkCG/example_plots/HCC2218__KaChCN_chr1.png
===================================================================
(Binary files differ)


Property changes on: pkg/patchworkCG/example_plots/HCC2218__KaChCN_chr1.png
___________________________________________________________________
Added: svn:mime-type
   + application/octet-stream

Added: pkg/patchworkCG/example_plots/HCC2218__KaCh_chr1.png
===================================================================
(Binary files differ)


Property changes on: pkg/patchworkCG/example_plots/HCC2218__KaCh_chr1.png
___________________________________________________________________
Added: svn:mime-type
   + application/octet-stream

Added: pkg/patchworkCG/example_plots/HCC2218__Ka_check.png
===================================================================
(Binary files differ)


Property changes on: pkg/patchworkCG/example_plots/HCC2218__Ka_check.png
___________________________________________________________________
Added: svn:mime-type
   + application/octet-stream