[Patchwork-commits] r73 - in pkg: patchwork patchwork/man patchworkCG patchworkCG/R patchworkCG/man
noreply at r-forge.r-project.org
noreply at r-forge.r-project.org
Tue Jan 24 13:35:49 CET 2012
Author: sebastian_d
Date: 2012-01-24 13:35:46 +0100 (Tue, 24 Jan 2012)
New Revision: 73
Modified:
pkg/patchwork/DESCRIPTION
pkg/patchwork/man/karyotype.Rd
pkg/patchwork/man/karyotype_check.Rd
pkg/patchwork/man/karyotype_chroms.Rd
pkg/patchwork/man/karyotype_chromsCN.Rd
pkg/patchwork/man/patchwork.CNA.Rd
pkg/patchwork/man/patchwork.GCNorm.Rd
pkg/patchwork/man/patchwork.Medians_n_AI.Rd
pkg/patchwork/man/patchwork.alleledata.Rd
pkg/patchwork/man/patchwork.applyref.Rd
pkg/patchwork/man/patchwork.createreference.Rd
pkg/patchwork/man/patchwork.findCNs.Rd
pkg/patchwork/man/patchwork.readChroms.Rd
pkg/patchwork/man/patchwork.segment.Rd
pkg/patchwork/man/patchwork.smoothing.Rd
pkg/patchwork/man/subfunctions_findCNs.Rd
pkg/patchworkCG/DESCRIPTION
pkg/patchworkCG/R/zzz.R
pkg/patchworkCG/man/CG_KaCh.Rd
pkg/patchworkCG/man/CG_KaChCN.Rd
pkg/patchworkCG/man/CG_Ka_check.Rd
pkg/patchworkCG/man/CG_karyotype.Rd
pkg/patchworkCG/man/patchwork.AI.Rd
pkg/patchworkCG/man/patchwork.CGCNV.Rd
pkg/patchworkCG/man/subfunctions_CGCNV.Rd
Log:
updated rasmussen to mayrhofer
Modified: pkg/patchwork/DESCRIPTION
===================================================================
--- pkg/patchwork/DESCRIPTION 2012-01-20 14:11:09 UTC (rev 72)
+++ pkg/patchwork/DESCRIPTION 2012-01-24 12:35:46 UTC (rev 73)
@@ -4,7 +4,7 @@
Version: 2.1
Date: 2012-11-01
Author: Markus Rasmussen, Sebastian DiLorenzo
-Maintainer: Markus Rasmussen <Markus.Rasmussen at medsci.uu.se>
+Maintainer: Markus Rasmussen <Markus.Mayrhofer at medsci.uu.se>
Description: Performs a copy number analysis of whole genome data.
License: GPL-2
Imports: DNAcopy,patchworkData
Modified: pkg/patchwork/man/karyotype.Rd
===================================================================
--- pkg/patchwork/man/karyotype.Rd 2012-01-20 14:11:09 UTC (rev 72)
+++ pkg/patchwork/man/karyotype.Rd 2012-01-24 12:35:46 UTC (rev 73)
@@ -63,7 +63,7 @@
%}
\author{
-Markus Rasmussen, \email{markus.rasmussen at medsci.uu.se}
+Markus Mayrhofer, \email{markus.mayrhofer at medsci.uu.se}
Sebastian DiLorenzo, \email{sebastian.dilorenzo at medsci.uu.se}
}
%\note{
Modified: pkg/patchwork/man/karyotype_check.Rd
===================================================================
--- pkg/patchwork/man/karyotype_check.Rd 2012-01-20 14:11:09 UTC (rev 72)
+++ pkg/patchwork/man/karyotype_check.Rd 2012-01-24 12:35:46 UTC (rev 73)
@@ -86,7 +86,7 @@
%}
\author{
-Markus Rasmussen, \email{markus.rasmussen at medsci.uu.se}
+Markus Mayrhofer, \email{markus.mayrhofer at medsci.uu.se}
Sebastian DiLorenzo, \email{sebastian.dilorenzo at medsci.uu.se}
}
%\note{
Modified: pkg/patchwork/man/karyotype_chroms.Rd
===================================================================
--- pkg/patchwork/man/karyotype_chroms.Rd 2012-01-20 14:11:09 UTC (rev 72)
+++ pkg/patchwork/man/karyotype_chroms.Rd 2012-01-24 12:35:46 UTC (rev 73)
@@ -99,7 +99,7 @@
%}
\author{
-Markus Rasmussen, \email{markus.rasmussen at medsci.uu.se}
+Markus Mayrhofer, \email{markus.mayrhofer at medsci.uu.se}
Sebastian DiLorenzo, \email{sebastian.dilorenzo at medsci.uu.se}
}
%\note{
Modified: pkg/patchwork/man/karyotype_chromsCN.Rd
===================================================================
--- pkg/patchwork/man/karyotype_chromsCN.Rd 2012-01-20 14:11:09 UTC (rev 72)
+++ pkg/patchwork/man/karyotype_chromsCN.Rd 2012-01-24 12:35:46 UTC (rev 73)
@@ -115,7 +115,7 @@
%}
\author{
-Markus Rasmussen, \email{markus.rasmussen at medsci.uu.se}
+Markus Mayrhofer, \email{markus.mayrhofer at medsci.uu.se}
Sebastian DiLorenzo, \email{sebastian.dilorenzo at medsci.uu.se}
}
%\note{
Modified: pkg/patchwork/man/patchwork.CNA.Rd
===================================================================
--- pkg/patchwork/man/patchwork.CNA.Rd 2012-01-20 14:11:09 UTC (rev 72)
+++ pkg/patchwork/man/patchwork.CNA.Rd 2012-01-24 12:35:46 UTC (rev 73)
@@ -84,7 +84,7 @@
%}
\author{
-Markus Rasmussen, \email{markus.rasmussen at medsci.uu.se}
+Markus Mayrhofer, \email{markus.mayrhofer at medsci.uu.se}
Sebastian DiLorenzo, \email{sebastian.dilorenzo at medsci.uu.se}
}
%\note{
Modified: pkg/patchwork/man/patchwork.GCNorm.Rd
===================================================================
--- pkg/patchwork/man/patchwork.GCNorm.Rd 2012-01-20 14:11:09 UTC (rev 72)
+++ pkg/patchwork/man/patchwork.GCNorm.Rd 2012-01-24 12:35:46 UTC (rev 73)
@@ -38,7 +38,7 @@
%}
\author{
-Markus Rasmussen, \email{markus.rasmussen at medsci.uu.se}
+Markus Mayrhofer, \email{markus.mayrhofer at medsci.uu.se}
Sebastian DiLorenzo, \email{sebastian.dilorenzo at medsci.uu.se}
}
%\note{
Modified: pkg/patchwork/man/patchwork.Medians_n_AI.Rd
===================================================================
--- pkg/patchwork/man/patchwork.Medians_n_AI.Rd 2012-01-20 14:11:09 UTC (rev 72)
+++ pkg/patchwork/man/patchwork.Medians_n_AI.Rd 2012-01-24 12:35:46 UTC (rev 73)
@@ -44,7 +44,7 @@
%}
\author{
-Markus Rasmussen, \email{markus.rasmussen at medsci.uu.se}
+Markus Mayrhofer, \email{markus.mayrhofer at medsci.uu.se}
Sebastian DiLorenzo, \email{sebastian.dilorenzo at medsci.uu.se}
}
%\note{
Modified: pkg/patchwork/man/patchwork.alleledata.Rd
===================================================================
--- pkg/patchwork/man/patchwork.alleledata.Rd 2012-01-20 14:11:09 UTC (rev 72)
+++ pkg/patchwork/man/patchwork.alleledata.Rd 2012-01-24 12:35:46 UTC (rev 73)
@@ -42,7 +42,7 @@
%}
\author{
-Markus Rasmussen, \email{markus.rasmussen at medsci.uu.se}
+Markus Mayrhofer, \email{markus.mayrhofer at medsci.uu.se}
Sebastian DiLorenzo, \email{sebastian.dilorenzo at medsci.uu.se}
}
%\note{
Modified: pkg/patchwork/man/patchwork.applyref.Rd
===================================================================
--- pkg/patchwork/man/patchwork.applyref.Rd 2012-01-20 14:11:09 UTC (rev 72)
+++ pkg/patchwork/man/patchwork.applyref.Rd 2012-01-24 12:35:46 UTC (rev 73)
@@ -43,7 +43,7 @@
%}
\author{
-Markus Rasmussen, \email{markus.rasmussen at medsci.uu.se}
+Markus Mayrhofer, \email{markus.mayrhofer at medsci.uu.se}
Sebastian DiLorenzo, \email{sebastian.dilorenzo at medsci.uu.se}
}
%\note{
Modified: pkg/patchwork/man/patchwork.createreference.Rd
===================================================================
--- pkg/patchwork/man/patchwork.createreference.Rd 2012-01-20 14:11:09 UTC (rev 72)
+++ pkg/patchwork/man/patchwork.createreference.Rd 2012-01-24 12:35:46 UTC (rev 73)
@@ -52,7 +52,7 @@
%}
\author{
-Markus Rasmussen, \email{markus.rasmussen at medsci.uu.se}
+Markus Mayrhofer, \email{markus.mayrhofer at medsci.uu.se}
Sebastian DiLorenzo, \email{sebastian.dilorenzo at medsci.uu.se}
}
%\note{
Modified: pkg/patchwork/man/patchwork.findCNs.Rd
===================================================================
--- pkg/patchwork/man/patchwork.findCNs.Rd 2012-01-20 14:11:09 UTC (rev 72)
+++ pkg/patchwork/man/patchwork.findCNs.Rd 2012-01-24 12:35:46 UTC (rev 73)
@@ -63,7 +63,7 @@
%}
\author{
-Markus Rasmussen, \email{markus.rasmussen at medsci.uu.se}
+Markus Mayrhofer, \email{markus.mayrhofer at medsci.uu.se}
Sebastian DiLorenzo, \email{sebastian.dilorenzo at medsci.uu.se}
}
%\note{
Modified: pkg/patchwork/man/patchwork.readChroms.Rd
===================================================================
--- pkg/patchwork/man/patchwork.readChroms.Rd 2012-01-20 14:11:09 UTC (rev 72)
+++ pkg/patchwork/man/patchwork.readChroms.Rd 2012-01-24 12:35:46 UTC (rev 73)
@@ -42,7 +42,7 @@
%}
\author{
-Markus Rasmussen, \email{markus.rasmussen at medsci.uu.se}
+Markus Mayrhofer, \email{markus.mayrhofer at medsci.uu.se}
Sebastian DiLorenzo, \email{sebastian.dilorenzo at medsci.uu.se}
}
%\note{
Modified: pkg/patchwork/man/patchwork.segment.Rd
===================================================================
--- pkg/patchwork/man/patchwork.segment.Rd 2012-01-20 14:11:09 UTC (rev 72)
+++ pkg/patchwork/man/patchwork.segment.Rd 2012-01-24 12:35:46 UTC (rev 73)
@@ -50,7 +50,7 @@
%}
\author{
-Markus Rasmussen, \email{markus.rasmussen at medsci.uu.se}
+Markus Mayrhofer, \email{markus.mayrhofer at medsci.uu.se}
Sebastian DiLorenzo, \email{sebastian.dilorenzo at medsci.uu.se}
}
%\note{
Modified: pkg/patchwork/man/patchwork.smoothing.Rd
===================================================================
--- pkg/patchwork/man/patchwork.smoothing.Rd 2012-01-20 14:11:09 UTC (rev 72)
+++ pkg/patchwork/man/patchwork.smoothing.Rd 2012-01-24 12:35:46 UTC (rev 73)
@@ -41,7 +41,7 @@
%}
\author{
-Markus Rasmussen, \email{markus.rasmussen at medsci.uu.se}
+Markus Mayrhofer, \email{markus.mayrhofer at medsci.uu.se}
Sebastian DiLorenzo, \email{sebastian.dilorenzo at medsci.uu.se}
}
%\note{
Modified: pkg/patchwork/man/subfunctions_findCNs.Rd
===================================================================
--- pkg/patchwork/man/subfunctions_findCNs.Rd 2012-01-20 14:11:09 UTC (rev 72)
+++ pkg/patchwork/man/subfunctions_findCNs.Rd 2012-01-24 12:35:46 UTC (rev 73)
@@ -52,7 +52,7 @@
%}
\author{
-Markus Rasmussen, \email{markus.rasmussen at medsci.uu.se}
+Markus Mayrhofer, \email{markus.mayrhofer at medsci.uu.se}
Sebastian DiLorenzo, \email{sebastian.dilorenzo at medsci.uu.se}
}
%\note{
Modified: pkg/patchworkCG/DESCRIPTION
===================================================================
--- pkg/patchworkCG/DESCRIPTION 2012-01-20 14:11:09 UTC (rev 72)
+++ pkg/patchworkCG/DESCRIPTION 2012-01-24 12:35:46 UTC (rev 73)
@@ -4,6 +4,6 @@
Version: 1.0
Date: 2012-11-01
Author: Markus Rasmussen, Sebastian DiLorenzo
-Maintainer: Markus Rasmussen <Markus.Rasmussen at medsci.uu.se>
+Maintainer: Markus Rasmussen <Markus.Mayrhofer at medsci.uu.se>
Description: Visualizes CompleteGenomics Whole genome data
License: GPL-2
Modified: pkg/patchworkCG/R/zzz.R
===================================================================
--- pkg/patchworkCG/R/zzz.R 2012-01-20 14:11:09 UTC (rev 72)
+++ pkg/patchworkCG/R/zzz.R 2012-01-24 12:35:46 UTC (rev 73)
@@ -1,3 +1,7 @@
.onLoad <- function(...){
- packageStartupMessage("Startup message \n cite us! \n How to run this \n")
+ packageStartupMessage(
+ "Welcome to patchwork for CompleteGenomics data! \n
+ cite us! \n
+ How to run this \n"
+ )
}
\ No newline at end of file
Modified: pkg/patchworkCG/man/CG_KaCh.Rd
===================================================================
--- pkg/patchworkCG/man/CG_KaCh.Rd 2012-01-20 14:11:09 UTC (rev 72)
+++ pkg/patchworkCG/man/CG_KaCh.Rd 2012-01-24 12:35:46 UTC (rev 73)
@@ -94,7 +94,7 @@
%}
\author{
-Markus Rasmussen, \email{markus.rasmussen at medsci.uu.se}
+Markus Mayrhofer, \email{markus.mayrhofer at medsci.uu.se}
Sebastian DiLorenzo, \email{sebastian.dilorenzo at medsci.uu.se}
}
%\note{
Modified: pkg/patchworkCG/man/CG_KaChCN.Rd
===================================================================
--- pkg/patchworkCG/man/CG_KaChCN.Rd 2012-01-20 14:11:09 UTC (rev 72)
+++ pkg/patchworkCG/man/CG_KaChCN.Rd 2012-01-24 12:35:46 UTC (rev 73)
@@ -110,7 +110,7 @@
%}
\author{
-Markus Rasmussen, \email{markus.rasmussen at medsci.uu.se}
+Markus Mayrhofer, \email{markus.mayrhofer at medsci.uu.se}
Sebastian DiLorenzo, \email{sebastian.dilorenzo at medsci.uu.se}
}
%\note{
Modified: pkg/patchworkCG/man/CG_Ka_check.Rd
===================================================================
--- pkg/patchworkCG/man/CG_Ka_check.Rd 2012-01-20 14:11:09 UTC (rev 72)
+++ pkg/patchworkCG/man/CG_Ka_check.Rd 2012-01-24 12:35:46 UTC (rev 73)
@@ -86,7 +86,7 @@
%}
\author{
-Markus Rasmussen, \email{markus.rasmussen at medsci.uu.se}
+Markus Mayrhofer, \email{markus.mayrhofer at medsci.uu.se}
Sebastian DiLorenzo, \email{sebastian.dilorenzo at medsci.uu.se}
}
%\note{
Modified: pkg/patchworkCG/man/CG_karyotype.Rd
===================================================================
--- pkg/patchworkCG/man/CG_karyotype.Rd 2012-01-20 14:11:09 UTC (rev 72)
+++ pkg/patchworkCG/man/CG_karyotype.Rd 2012-01-24 12:35:46 UTC (rev 73)
@@ -63,7 +63,7 @@
%}
\author{
-Markus Rasmussen, \email{markus.rasmussen at medsci.uu.se}
+Markus Mayrhofer, \email{markus.mayrhofer at medsci.uu.se}
Sebastian DiLorenzo, \email{sebastian.dilorenzo at medsci.uu.se}
}
%\note{
Modified: pkg/patchworkCG/man/patchwork.AI.Rd
===================================================================
--- pkg/patchworkCG/man/patchwork.AI.Rd 2012-01-20 14:11:09 UTC (rev 72)
+++ pkg/patchworkCG/man/patchwork.AI.Rd 2012-01-24 12:35:46 UTC (rev 73)
@@ -44,7 +44,7 @@
%}
\author{
-Markus Rasmussen, \email{markus.rasmussen at medsci.uu.se}
+Markus Mayrhofer, \email{markus.mayrhofer at medsci.uu.se}
Sebastian DiLorenzo, \email{sebastian.dilorenzo at medsci.uu.se}
}
%\note{
Modified: pkg/patchworkCG/man/patchwork.CGCNV.Rd
===================================================================
--- pkg/patchworkCG/man/patchwork.CGCNV.Rd 2012-01-20 14:11:09 UTC (rev 72)
+++ pkg/patchworkCG/man/patchwork.CGCNV.Rd 2012-01-24 12:35:46 UTC (rev 73)
@@ -66,7 +66,7 @@
%}
\author{
-Markus Rasmussen, \email{markus.rasmussen at medsci.uu.se}
+Markus Mayrhofer, \email{markus.mayrhofer at medsci.uu.se}
Sebastian DiLorenzo, \email{sebastian.dilorenzo at medsci.uu.se}
}
%\note{
Modified: pkg/patchworkCG/man/subfunctions_CGCNV.Rd
===================================================================
--- pkg/patchworkCG/man/subfunctions_CGCNV.Rd 2012-01-20 14:11:09 UTC (rev 72)
+++ pkg/patchworkCG/man/subfunctions_CGCNV.Rd 2012-01-24 12:35:46 UTC (rev 73)
@@ -60,7 +60,7 @@
%}
\author{
-Markus Rasmussen, \email{markus.rasmussen at medsci.uu.se}
+Markus Mayrhofer, \email{markus.mayrhofer at medsci.uu.se}
Sebastian DiLorenzo, \email{sebastian.dilorenzo at medsci.uu.se}
}
%\note{
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