[Patchwork-commits] r92 - pkg/patchwork/R

[noreply at r-forge.r-project.org]

Author: mayrhofer
Date: 2012-02-15 14:29:40 +0100 (Wed, 15 Feb 2012)
New Revision: 92

Modified:
   pkg/patchwork/R/patchwork.CNA.r
Log:
fixed CELL% calc and some other stuff

Modified: pkg/patchwork/R/patchwork.CNA.r
===================================================================
--- pkg/patchwork/R/patchwork.CNA.r	2012-02-15 13:27:38 UTC (rev 91)
+++ pkg/patchwork/R/patchwork.CNA.r	2012-02-15 13:29:40 UTC (rev 92)
@@ -148,12 +148,12 @@
 	cat("Initiating Plotting \n")
 	karyotype(segs$chr,segs$start,segs$end,segs$median,segs$ai,
 			name=as.character(BamFile),
-			xlim=c(0,2.4),ylim=c(0,1))
+			xlim=c(0,2.4),ylim=c(0.1,1))
 	karyotype_chroms(segs$chr,segs$start,segs$end,segs$median,segs$ai,
 			kbsegs$chr,kbsegs$pos,kbsegs$ratio,
 			alf$achr,alf$apos,(1-alf$amin/alf$amax),
 			name=as.character(BamFile),xlim=c(0,2.4),
-			ylim=c(0,1))
+			ylim=c(0.1,1))
 	cat("Plotting Complete \n")
 	cat("Shutting down..... \n")
 	}