[Patchwork-commits] r89 - in pkg/patchwork: . R

[noreply at r-forge.r-project.org]

Author: sebastian_d
Date: 2012-02-13 16:59:37 +0100 (Mon, 13 Feb 2012)
New Revision: 89

Modified:
   pkg/patchwork/DESCRIPTION
   pkg/patchwork/NAMESPACE
   pkg/patchwork/R/patchwork.CNA.r
Log:
removed DNAcopy from imports in description and namespace, made it load in patchwork.CNA instead

Modified: pkg/patchwork/DESCRIPTION
===================================================================
--- pkg/patchwork/DESCRIPTION	2012-02-13 15:07:52 UTC (rev 88)
+++ pkg/patchwork/DESCRIPTION	2012-02-13 15:59:37 UTC (rev 89)
@@ -7,4 +7,4 @@
 Maintainer: Markus Rasmussen <Markus.Mayrhofer at medsci.uu.se>
 Description: Performs a copy number analysis of whole genome data.
 License: GPL-2
-Imports: DNAcopy,patchworkData
+Imports: patchworkData

Modified: pkg/patchwork/NAMESPACE
===================================================================
--- pkg/patchwork/NAMESPACE	2012-02-13 15:07:52 UTC (rev 88)
+++ pkg/patchwork/NAMESPACE	2012-02-13 15:59:37 UTC (rev 89)
@@ -1,4 +1,4 @@
-import(DNAcopy,patchworkData)
+import(patchworkData)
 
 export(karyotype_check,
 		karyotype_chroms,
@@ -19,4 +19,4 @@
 		weightedMean,
 		is.autosome,
 		deChrom_ucsc,
-		chrom_ucsc)
\ No newline at end of file
+		chrom_ucsc)

Modified: pkg/patchwork/R/patchwork.CNA.r
===================================================================
--- pkg/patchwork/R/patchwork.CNA.r	2012-02-13 15:07:52 UTC (rev 88)
+++ pkg/patchwork/R/patchwork.CNA.r	2012-02-13 15:59:37 UTC (rev 89)
@@ -3,7 +3,7 @@
 	#library(patchwork)
 	#patchwork.CNA("cancer.bam","pile.up",reference="illumina")
 	#Load DNAcopy
-	#library(DNAcopy)
+	library(DNAcopy)
 	#Load data included in package
 	#packagepath = system.file(package="patchwork")
 	#load(paste(packagepath,"/data/commonSnps132.RData",sep=""))