[Patchwork-commits] r125 - www

[noreply at r-forge.r-project.org]

Author: sebastian_d
Date: 2012-04-19 11:47:15 +0200 (Thu, 19 Apr 2012)
New Revision: 125

Modified:
   www/pw_inst.php
   www/pw_requ.php
   www/style.css
Log:
Update homepage with info on pysam installation

Modified: www/pw_inst.php
===================================================================
--- www/pw_inst.php	2012-04-18 11:37:42 UTC (rev 124)
+++ www/pw_inst.php	2012-04-19 09:47:15 UTC (rev 125)
@@ -28,4 +28,15 @@
 	Patchwork</a><br />
 <a href="http://www.bioconductor.org/packages/release/bioc/html/DNAcopy.html" target="_blank" style="text-decoration:none;">
 	DNACopy</a>
+
+<br />
+
+<h4>Python and Pysam</h4>
+
+Patchwork uses a python mod called pysam for chromosome reading. The package already checks if you have
+it installed and otherwise installs it for you the first time you run patchwork however if you lack python
+or python development on your system the installation fails. It seems to already be included in MAC OS X but
+on other systems you should install it. Here is a 
+<a href="http://wiki.python.org/moin/BeginnersGuide/Download" target="_blank" style="text-decoration:none;">guide.</a>
+<br />
 	
\ No newline at end of file

Modified: www/pw_requ.php
===================================================================
--- www/pw_requ.php	2012-04-18 11:37:42 UTC (rev 124)
+++ www/pw_requ.php	2012-04-19 09:47:15 UTC (rev 125)
@@ -1,13 +1,13 @@
 <!-- Flowchart -->
-<div style="text-align:center;">
+<!--<div style="text-align:center;">
 <img id="flowchartcg" src="css/img/flowPWreq.png" 
 alt="Flowchart of requirements for patchwork" title="Flowchart of requirements">
-</div><br />
+</div><br /> -->
 
 To successfully run patchwork you will need to obtain/create these items:<br />
 
 <ul class="checks">
-	<li>A Human Genome fasta file</li>
+	<!-- <li>A Human Genome fasta file</li> -->
 	<li>A Sorted BAM file of tumor content</li>
 	<li>A BAI of your BAM file</li>
 	<li>A Pileup of your BAM file</li>

Modified: www/style.css
===================================================================
--- www/style.css	2012-04-18 11:37:42 UTC (rev 124)
+++ www/style.css	2012-04-19 09:47:15 UTC (rev 125)
@@ -87,7 +87,11 @@
 	height: 100%;
 } */
 
-html { min-height: 100%; margin-bottom: 1px; }
+html { 
+overflow-y: scroll;
+min-height: 100%; 
+margin-bottom: 1px; 
+}
 
 #wrap{
 width:960px;