[Patchwork-commits] r62 - in pkg/patchwork: . man
noreply at r-forge.r-project.org
noreply at r-forge.r-project.org
Wed Dec 21 14:23:29 CET 2011
Author: sebastian_d
Date: 2011-12-21 14:23:28 +0100 (Wed, 21 Dec 2011)
New Revision: 62
Modified:
pkg/patchwork/README
pkg/patchwork/man/karyotype.Rd
pkg/patchwork/man/karyotype_check.Rd
pkg/patchwork/man/karyotype_chroms.Rd
pkg/patchwork/man/karyotype_chromsCN.Rd
pkg/patchwork/man/patchwork.CNA.Rd
pkg/patchwork/man/patchwork.GCNorm.Rd
pkg/patchwork/man/patchwork.Medians_n_AI.Rd
pkg/patchwork/man/patchwork.alleledata.Rd
pkg/patchwork/man/patchwork.applyref.Rd
pkg/patchwork/man/patchwork.createreference.Rd
pkg/patchwork/man/patchwork.findCNs.Rd
pkg/patchwork/man/patchwork.readChroms.Rd
pkg/patchwork/man/patchwork.segment.Rd
pkg/patchwork/man/patchwork.smoothing.Rd
pkg/patchwork/man/subfunctions_findCNs.Rd
Log:
Added email adress to author documentation
Modified: pkg/patchwork/README
===================================================================
--- pkg/patchwork/README 2011-12-21 08:43:04 UTC (rev 61)
+++ pkg/patchwork/README 2011-12-21 13:23:28 UTC (rev 62)
@@ -1,13 +1,30 @@
Welcome to Patchwork.
-For patchwork to run you will need to install DNACopy from Bioconductor.
+For patchwork to run correctly, or even install, you will need to install DNACopy from Bioconductor.
/-------------------/
Installation Guide:
/-------------------/
-1. Start R (as of writing version 2.14.0)
-2. source("http://bioconductor.org/biocLite.R")
-3. biocLite("DNAcopy")
+#Start R (as of writing version 2.14.0)
+ source("http://bioconductor.org/biocLite.R")
+ biocLite("DNAcopy")
+#After DNAcopy is installed you can install patchwork and patchworkData using these commands:
+
+ install.packages("patchworkData", repos="http://R-Forge.R-project.org")
+ install.packages("patchwork", repos="http://R-Forge.R-project.org")
+
+#If for some reason that does not work, it happened to me, add the type=source to it, as so:
+
+ install.packages("patchworkData", repos="http://R-Forge.R-project.org",type="source")
+ install.packages("patchwork", repos="http://R-Forge.R-project.org",type="source")
+
Good luck! =)
+
+
+/------------------------------------/
+Contact information:
+Sebastian.Dilorenzo at medsci.uu.se
+Markus.Mayrhofer at medsci.uu.se
+/------------------------------------/
Modified: pkg/patchwork/man/karyotype.Rd
===================================================================
--- pkg/patchwork/man/karyotype.Rd 2011-12-21 08:43:04 UTC (rev 61)
+++ pkg/patchwork/man/karyotype.Rd 2011-12-21 13:23:28 UTC (rev 62)
@@ -63,8 +63,8 @@
%}
\author{
-Markus Rasmussen
-Sebastian DiLorenzo
+Markus Rasmussen, \email{markus.rasmussen at medsci.uu.se}
+Sebastian DiLorenzo, \email{sebastian.dilorenzo at medsci.uu.se}
}
%\note{
%% ~~further notes~~
Modified: pkg/patchwork/man/karyotype_check.Rd
===================================================================
--- pkg/patchwork/man/karyotype_check.Rd 2011-12-21 08:43:04 UTC (rev 61)
+++ pkg/patchwork/man/karyotype_check.Rd 2011-12-21 13:23:28 UTC (rev 62)
@@ -86,8 +86,8 @@
%}
\author{
-Markus Rasmussen
-Sebastian DiLorenzo
+Markus Rasmussen, \email{markus.rasmussen at medsci.uu.se}
+Sebastian DiLorenzo, \email{sebastian.dilorenzo at medsci.uu.se}
}
%\note{
%% ~~further notes~~
Modified: pkg/patchwork/man/karyotype_chroms.Rd
===================================================================
--- pkg/patchwork/man/karyotype_chroms.Rd 2011-12-21 08:43:04 UTC (rev 61)
+++ pkg/patchwork/man/karyotype_chroms.Rd 2011-12-21 13:23:28 UTC (rev 62)
@@ -99,8 +99,8 @@
%}
\author{
-Markus Rasmussen
-Sebastian DiLorenzo
+Markus Rasmussen, \email{markus.rasmussen at medsci.uu.se}
+Sebastian DiLorenzo, \email{sebastian.dilorenzo at medsci.uu.se}
}
%\note{
%% ~~further notes~~
Modified: pkg/patchwork/man/karyotype_chromsCN.Rd
===================================================================
--- pkg/patchwork/man/karyotype_chromsCN.Rd 2011-12-21 08:43:04 UTC (rev 61)
+++ pkg/patchwork/man/karyotype_chromsCN.Rd 2011-12-21 13:23:28 UTC (rev 62)
@@ -115,8 +115,8 @@
%}
\author{
-Markus Rasmussen
-Sebastian DiLorenzo
+Markus Rasmussen, \email{markus.rasmussen at medsci.uu.se}
+Sebastian DiLorenzo, \email{sebastian.dilorenzo at medsci.uu.se}
}
%\note{
%% ~~further notes~~
Modified: pkg/patchwork/man/patchwork.CNA.Rd
===================================================================
--- pkg/patchwork/man/patchwork.CNA.Rd 2011-12-21 08:43:04 UTC (rev 61)
+++ pkg/patchwork/man/patchwork.CNA.Rd 2011-12-21 13:23:28 UTC (rev 62)
@@ -84,8 +84,8 @@
%}
\author{
-Markus Rasmussen
-Sebastian DiLorenzo
+Markus Rasmussen, \email{markus.rasmussen at medsci.uu.se}
+Sebastian DiLorenzo, \email{sebastian.dilorenzo at medsci.uu.se}
}
%\note{
%% ~~further notes~~
Modified: pkg/patchwork/man/patchwork.GCNorm.Rd
===================================================================
--- pkg/patchwork/man/patchwork.GCNorm.Rd 2011-12-21 08:43:04 UTC (rev 61)
+++ pkg/patchwork/man/patchwork.GCNorm.Rd 2011-12-21 13:23:28 UTC (rev 62)
@@ -38,8 +38,8 @@
%}
\author{
-Markus Rasmussen
-Sebastian DiLorenzo
+Markus Rasmussen, \email{markus.rasmussen at medsci.uu.se}
+Sebastian DiLorenzo, \email{sebastian.dilorenzo at medsci.uu.se}
}
%\note{
%% ~~further notes~~
Modified: pkg/patchwork/man/patchwork.Medians_n_AI.Rd
===================================================================
--- pkg/patchwork/man/patchwork.Medians_n_AI.Rd 2011-12-21 08:43:04 UTC (rev 61)
+++ pkg/patchwork/man/patchwork.Medians_n_AI.Rd 2011-12-21 13:23:28 UTC (rev 62)
@@ -44,8 +44,8 @@
%}
\author{
-Markus Rasmussen
-Sebastian DiLorenzo
+Markus Rasmussen, \email{markus.rasmussen at medsci.uu.se}
+Sebastian DiLorenzo, \email{sebastian.dilorenzo at medsci.uu.se}
}
%\note{
%% ~~further notes~~
Modified: pkg/patchwork/man/patchwork.alleledata.Rd
===================================================================
--- pkg/patchwork/man/patchwork.alleledata.Rd 2011-12-21 08:43:04 UTC (rev 61)
+++ pkg/patchwork/man/patchwork.alleledata.Rd 2011-12-21 13:23:28 UTC (rev 62)
@@ -42,8 +42,8 @@
%}
\author{
-Markus Rasmussen
-Sebastian DiLorenzo
+Markus Rasmussen, \email{markus.rasmussen at medsci.uu.se}
+Sebastian DiLorenzo, \email{sebastian.dilorenzo at medsci.uu.se}
}
%\note{
%% ~~further notes~~
Modified: pkg/patchwork/man/patchwork.applyref.Rd
===================================================================
--- pkg/patchwork/man/patchwork.applyref.Rd 2011-12-21 08:43:04 UTC (rev 61)
+++ pkg/patchwork/man/patchwork.applyref.Rd 2011-12-21 13:23:28 UTC (rev 62)
@@ -43,8 +43,8 @@
%}
\author{
-Markus Rasmussen
-Sebastian DiLorenzo
+Markus Rasmussen, \email{markus.rasmussen at medsci.uu.se}
+Sebastian DiLorenzo, \email{sebastian.dilorenzo at medsci.uu.se}
}
%\note{
%% ~~further notes~~
Modified: pkg/patchwork/man/patchwork.createreference.Rd
===================================================================
--- pkg/patchwork/man/patchwork.createreference.Rd 2011-12-21 08:43:04 UTC (rev 61)
+++ pkg/patchwork/man/patchwork.createreference.Rd 2011-12-21 13:23:28 UTC (rev 62)
@@ -52,8 +52,8 @@
%}
\author{
-Markus Rasmussen
-Sebastian DiLorenzo
+Markus Rasmussen, \email{markus.rasmussen at medsci.uu.se}
+Sebastian DiLorenzo, \email{sebastian.dilorenzo at medsci.uu.se}
}
%\note{
%% ~~further notes~~
Modified: pkg/patchwork/man/patchwork.findCNs.Rd
===================================================================
--- pkg/patchwork/man/patchwork.findCNs.Rd 2011-12-21 08:43:04 UTC (rev 61)
+++ pkg/patchwork/man/patchwork.findCNs.Rd 2011-12-21 13:23:28 UTC (rev 62)
@@ -63,8 +63,8 @@
%}
\author{
-Markus Rasmussen
-Sebastian DiLorenzo
+Markus Rasmussen, \email{markus.rasmussen at medsci.uu.se}
+Sebastian DiLorenzo, \email{sebastian.dilorenzo at medsci.uu.se}
}
%\note{
%% ~~further notes~~
Modified: pkg/patchwork/man/patchwork.readChroms.Rd
===================================================================
--- pkg/patchwork/man/patchwork.readChroms.Rd 2011-12-21 08:43:04 UTC (rev 61)
+++ pkg/patchwork/man/patchwork.readChroms.Rd 2011-12-21 13:23:28 UTC (rev 62)
@@ -42,8 +42,8 @@
%}
\author{
-Markus Rasmussen
-Sebastian DiLorenzo
+Markus Rasmussen, \email{markus.rasmussen at medsci.uu.se}
+Sebastian DiLorenzo, \email{sebastian.dilorenzo at medsci.uu.se}
}
%\note{
%% ~~further notes~~
Modified: pkg/patchwork/man/patchwork.segment.Rd
===================================================================
--- pkg/patchwork/man/patchwork.segment.Rd 2011-12-21 08:43:04 UTC (rev 61)
+++ pkg/patchwork/man/patchwork.segment.Rd 2011-12-21 13:23:28 UTC (rev 62)
@@ -50,8 +50,8 @@
%}
\author{
-Markus Rasmussen
-Sebastian DiLorenzo
+Markus Rasmussen, \email{markus.rasmussen at medsci.uu.se}
+Sebastian DiLorenzo, \email{sebastian.dilorenzo at medsci.uu.se}
}
%\note{
%% ~~further notes~~
Modified: pkg/patchwork/man/patchwork.smoothing.Rd
===================================================================
--- pkg/patchwork/man/patchwork.smoothing.Rd 2011-12-21 08:43:04 UTC (rev 61)
+++ pkg/patchwork/man/patchwork.smoothing.Rd 2011-12-21 13:23:28 UTC (rev 62)
@@ -41,8 +41,8 @@
%}
\author{
-Markus Rasmussen
-Sebastian DiLorenzo
+Markus Rasmussen, \email{markus.rasmussen at medsci.uu.se}
+Sebastian DiLorenzo, \email{sebastian.dilorenzo at medsci.uu.se}
}
%\note{
%% ~~further notes~~
Modified: pkg/patchwork/man/subfunctions_findCNs.Rd
===================================================================
--- pkg/patchwork/man/subfunctions_findCNs.Rd 2011-12-21 08:43:04 UTC (rev 61)
+++ pkg/patchwork/man/subfunctions_findCNs.Rd 2011-12-21 13:23:28 UTC (rev 62)
@@ -52,8 +52,8 @@
%}
\author{
-Markus Rasmussen
-Sebastian DiLorenzo
+Markus Rasmussen, \email{markus.rasmussen at medsci.uu.se}
+Sebastian DiLorenzo, \email{sebastian.dilorenzo at medsci.uu.se}
}
%\note{
%% ~~further notes~~
More information about the Patchwork-commits
mailing list