[Patchwork-commits] r48 - in pkg/patchworkData: . man

noreply at r-forge.r-project.org noreply at r-forge.r-project.org
Wed Dec 14 12:27:52 CET 2011 

Author: sebastian_d
Date: 2011-12-14 12:27:51 +0100 (Wed, 14 Dec 2011)
New Revision: 48

Removed:
   pkg/patchworkData/data/
Modified:
   pkg/patchworkData/man/chr1.mark.Rd
   pkg/patchworkData/man/chr10.mark.Rd
   pkg/patchworkData/man/chr11.mark.Rd
   pkg/patchworkData/man/chr12.mark.Rd
   pkg/patchworkData/man/chr13.mark.Rd
   pkg/patchworkData/man/chr14.mark.Rd
   pkg/patchworkData/man/chr15.mark.Rd
   pkg/patchworkData/man/chr16.mark.Rd
   pkg/patchworkData/man/chr17.mark.Rd
   pkg/patchworkData/man/chr18.mark.Rd
   pkg/patchworkData/man/chr19.mark.Rd
   pkg/patchworkData/man/chr2.mark.Rd
   pkg/patchworkData/man/chr20.mark.Rd
   pkg/patchworkData/man/chr21.mark.Rd
   pkg/patchworkData/man/chr22.mark.Rd
   pkg/patchworkData/man/chr3.mark.Rd
   pkg/patchworkData/man/chr4.mark.Rd
   pkg/patchworkData/man/chr5.mark.Rd
   pkg/patchworkData/man/chr6.mark.Rd
   pkg/patchworkData/man/chr7.mark.Rd
   pkg/patchworkData/man/chr8.mark.Rd
   pkg/patchworkData/man/chr9.mark.Rd
   pkg/patchworkData/man/chrX.mark.Rd
   pkg/patchworkData/man/chrY.mark.Rd
   pkg/patchworkData/man/commonSnps132.Rd
   pkg/patchworkData/man/datasolexa.Rd
   pkg/patchworkData/man/datasolid.Rd
   pkg/patchworkData/man/ideogram.Rd
Log:
implementing new data

Modified: pkg/patchworkData/man/chr1.mark.Rd
===================================================================
--- pkg/patchworkData/man/chr1.mark.Rd	2011-12-13 15:57:27 UTC (rev 47)
+++ pkg/patchworkData/man/chr1.mark.Rd	2011-12-14 11:27:51 UTC (rev 48)
@@ -1,5 +1,6 @@
 \name{chr1.mark}
 \alias{chr1.mark}
+\alias{gc}
 \docType{data}
 
 \title{
@@ -33,10 +34,10 @@
 %}
 
 \seealso{
-  The function \code{\link{patchwork.readChroms}} uses this data.
+  The function \code{\link[patchwork]{patchwork.readChroms}} uses this data.
 }
 
 %\examples{
 %}
 
-%\keyword{datasets}
+s\keyword{datasets}

Modified: pkg/patchworkData/man/chr10.mark.Rd
===================================================================
--- pkg/patchworkData/man/chr10.mark.Rd	2011-12-13 15:57:27 UTC (rev 47)
+++ pkg/patchworkData/man/chr10.mark.Rd	2011-12-14 11:27:51 UTC (rev 48)
@@ -1,5 +1,6 @@
 \name{chr10.mark}
 \alias{chr10.mark}
+\alias{gc}
 \docType{data}
 
 \title{
@@ -33,10 +34,10 @@
 %}
 
 \seealso{
-  The function \code{\link{patchwork.readChroms}} uses this data.
+  The function \code{\link[patchwork]{patchwork.readChroms}} uses this data.
 }
 
 %\examples{
 %}
 
-%\keyword{datasets}
\ No newline at end of file
+\keyword{datasets}
\ No newline at end of file

Modified: pkg/patchworkData/man/chr11.mark.Rd
===================================================================
--- pkg/patchworkData/man/chr11.mark.Rd	2011-12-13 15:57:27 UTC (rev 47)
+++ pkg/patchworkData/man/chr11.mark.Rd	2011-12-14 11:27:51 UTC (rev 48)
@@ -1,5 +1,6 @@
 \name{chr11.mark}
 \alias{chr11.mark}
+\alias{gc}
 \docType{data}
 
 \title{
@@ -33,10 +34,10 @@
 %}
 
 \seealso{
-  The function \code{\link{patchwork.readChroms}} uses this data.
+  The function \code{\link[patchwork]{patchwork.readChroms}} uses this data.
 }
 
 %\examples{
 %}
 
-%\keyword{datasets}
\ No newline at end of file
+\keyword{datasets}
\ No newline at end of file

Modified: pkg/patchworkData/man/chr12.mark.Rd
===================================================================
--- pkg/patchworkData/man/chr12.mark.Rd	2011-12-13 15:57:27 UTC (rev 47)
+++ pkg/patchworkData/man/chr12.mark.Rd	2011-12-14 11:27:51 UTC (rev 48)
@@ -1,5 +1,6 @@
 \name{chr12.mark}
 \alias{chr12.mark}
+\alias{gc}
 \docType{data}
 
 \title{
@@ -33,10 +34,10 @@
 %}
 
 \seealso{
-  The function \code{\link{patchwork.readChroms}} uses this data.
+  The function \code{\link[patchwork]{patchwork.readChroms}} uses this data.
 }
 
 %\examples{
 %}
 
-%\keyword{datasets}
\ No newline at end of file
+\keyword{datasets}
\ No newline at end of file

Modified: pkg/patchworkData/man/chr13.mark.Rd
===================================================================
--- pkg/patchworkData/man/chr13.mark.Rd	2011-12-13 15:57:27 UTC (rev 47)
+++ pkg/patchworkData/man/chr13.mark.Rd	2011-12-14 11:27:51 UTC (rev 48)
@@ -1,5 +1,6 @@
 \name{chr13.mark}
 \alias{chr13.mark}
+\alias{gc}
 \docType{data}
 
 \title{
@@ -33,10 +34,10 @@
 %}
 
 \seealso{
-  The function \code{\link{patchwork.readChroms}} uses this data.
+  The function \code{\link[patchwork]{patchwork.readChroms}} uses this data.
 }
 
 %\examples{
 %}
 
-%\keyword{datasets}
\ No newline at end of file
+\keyword{datasets}
\ No newline at end of file

Modified: pkg/patchworkData/man/chr14.mark.Rd
===================================================================
--- pkg/patchworkData/man/chr14.mark.Rd	2011-12-13 15:57:27 UTC (rev 47)
+++ pkg/patchworkData/man/chr14.mark.Rd	2011-12-14 11:27:51 UTC (rev 48)
@@ -1,5 +1,6 @@
 \name{chr14.mark}
 \alias{chr14.mark}
+\alias{gc}
 \docType{data}
 
 \title{
@@ -33,10 +34,10 @@
 %}
 
 \seealso{
-  The function \code{\link{patchwork.readChroms}} uses this data.
+  The function \code{\link[patchwork]{patchwork.readChroms}} uses this data.
 }
 
 %\examples{
 %}
 
-%\keyword{datasets}
\ No newline at end of file
+\keyword{datasets}
\ No newline at end of file

Modified: pkg/patchworkData/man/chr15.mark.Rd
===================================================================
--- pkg/patchworkData/man/chr15.mark.Rd	2011-12-13 15:57:27 UTC (rev 47)
+++ pkg/patchworkData/man/chr15.mark.Rd	2011-12-14 11:27:51 UTC (rev 48)
@@ -1,5 +1,6 @@
 \name{chr15.mark}
 \alias{chr15.mark}
+\alias{gc}
 \docType{data}
 
 \title{
@@ -33,10 +34,10 @@
 %}
 
 \seealso{
-  The function \code{\link{patchwork.readChroms}} uses this data.
+  The function \code{\link[patchwork]{patchwork.readChroms}} uses this data.
 }
 
 %\examples{
 %}
 
-%\keyword{datasets}
\ No newline at end of file
+\keyword{datasets}
\ No newline at end of file

Modified: pkg/patchworkData/man/chr16.mark.Rd
===================================================================
--- pkg/patchworkData/man/chr16.mark.Rd	2011-12-13 15:57:27 UTC (rev 47)
+++ pkg/patchworkData/man/chr16.mark.Rd	2011-12-14 11:27:51 UTC (rev 48)
@@ -1,5 +1,6 @@
 \name{chr16.mark}
 \alias{chr16.mark}
+\alias{gc}
 \docType{data}
 
 \title{
@@ -33,10 +34,10 @@
 %}
 
 \seealso{
-  The function \code{\link{patchwork.readChroms}} uses this data.
+  The function \code{\link[patchwork]{patchwork.readChroms}} uses this data.
 }
 
 %\examples{
 %}
 
-%\keyword{datasets}
\ No newline at end of file
+\keyword{datasets}
\ No newline at end of file

Modified: pkg/patchworkData/man/chr17.mark.Rd
===================================================================
--- pkg/patchworkData/man/chr17.mark.Rd	2011-12-13 15:57:27 UTC (rev 47)
+++ pkg/patchworkData/man/chr17.mark.Rd	2011-12-14 11:27:51 UTC (rev 48)
@@ -1,5 +1,6 @@
 \name{chr17.mark}
 \alias{chr17.mark}
+\alias{gc}
 \docType{data}
 
 \title{
@@ -33,10 +34,10 @@
 %}
 
 \seealso{
-  The function \code{\link{patchwork.readChroms}} uses this data.
+  The function \code{\link[patchwork]{patchwork.readChroms}} uses this data.
 }
 
 %\examples{
 %}
 
-%\keyword{datasets}
\ No newline at end of file
+\keyword{datasets}
\ No newline at end of file

Modified: pkg/patchworkData/man/chr18.mark.Rd
===================================================================
--- pkg/patchworkData/man/chr18.mark.Rd	2011-12-13 15:57:27 UTC (rev 47)
+++ pkg/patchworkData/man/chr18.mark.Rd	2011-12-14 11:27:51 UTC (rev 48)
@@ -1,5 +1,6 @@
 \name{chr18.mark}
 \alias{chr18.mark}
+\alias{gc}
 \docType{data}
 
 \title{
@@ -33,10 +34,10 @@
 %}
 
 \seealso{
-  The function \code{\link{patchwork.readChroms}} uses this data.
+  The function \code{\link[patchwork]{patchwork.readChroms}} uses this data.
 }
 
 %\examples{
 %}
 
-%\keyword{datasets}
\ No newline at end of file
+\keyword{datasets}
\ No newline at end of file

Modified: pkg/patchworkData/man/chr19.mark.Rd
===================================================================
--- pkg/patchworkData/man/chr19.mark.Rd	2011-12-13 15:57:27 UTC (rev 47)
+++ pkg/patchworkData/man/chr19.mark.Rd	2011-12-14 11:27:51 UTC (rev 48)
@@ -1,5 +1,6 @@
 \name{chr19.mark}
 \alias{chr19.mark}
+\alias{gc}
 \docType{data}
 
 \title{
@@ -33,10 +34,10 @@
 %}
 
 \seealso{
-  The function \code{\link{patchwork.readChroms}} uses this data.
+  The function \code{\link[patchwork]{patchwork.readChroms}} uses this data.
 }
 
 %\examples{
 %}
 
-%\keyword{datasets}
\ No newline at end of file
+\keyword{datasets}
\ No newline at end of file

Modified: pkg/patchworkData/man/chr2.mark.Rd
===================================================================
--- pkg/patchworkData/man/chr2.mark.Rd	2011-12-13 15:57:27 UTC (rev 47)
+++ pkg/patchworkData/man/chr2.mark.Rd	2011-12-14 11:27:51 UTC (rev 48)
@@ -1,5 +1,6 @@
 \name{chr2.mark}
 \alias{chr2.mark}
+\alias{gc}
 \docType{data}
 
 \title{
@@ -33,10 +34,10 @@
 %}
 
 \seealso{
-  The function \code{\link{patchwork.readChroms}} uses this data.
+  The function \code{\link[patchwork]{patchwork.readChroms}} uses this data.
 }
 
 %\examples{
 %}
 
-%\keyword{datasets}
\ No newline at end of file
+\keyword{datasets}
\ No newline at end of file

Modified: pkg/patchworkData/man/chr20.mark.Rd
===================================================================
--- pkg/patchworkData/man/chr20.mark.Rd	2011-12-13 15:57:27 UTC (rev 47)
+++ pkg/patchworkData/man/chr20.mark.Rd	2011-12-14 11:27:51 UTC (rev 48)
@@ -1,5 +1,6 @@
 \name{chr20.mark}
 \alias{chr20.mark}
+\alias{gc}
 \docType{data}
 
 \title{
@@ -33,10 +34,10 @@
 %}
 
 \seealso{
-  The function \code{\link{patchwork.readChroms}} uses this data.
+  The function \code{\link[patchwork]{patchwork.readChroms}} uses this data.
 }
 
 %\examples{
 %}
 
-%\keyword{datasets}
\ No newline at end of file
+\keyword{datasets}
\ No newline at end of file

Modified: pkg/patchworkData/man/chr21.mark.Rd
===================================================================
--- pkg/patchworkData/man/chr21.mark.Rd	2011-12-13 15:57:27 UTC (rev 47)
+++ pkg/patchworkData/man/chr21.mark.Rd	2011-12-14 11:27:51 UTC (rev 48)
@@ -1,5 +1,6 @@
 \name{chr21.mark}
 \alias{chr21.mark}
+\alias{gc}
 \docType{data}
 
 \title{
@@ -33,10 +34,10 @@
 %}
 
 \seealso{
-  The function \code{\link{patchwork.readChroms}} uses this data.
+  The function \code{\link[patchwork]{patchwork.readChroms}} uses this data.
 }
 
 %\examples{
 %}
 
-%\keyword{datasets}
\ No newline at end of file
+\keyword{datasets}
\ No newline at end of file

Modified: pkg/patchworkData/man/chr22.mark.Rd
===================================================================
--- pkg/patchworkData/man/chr22.mark.Rd	2011-12-13 15:57:27 UTC (rev 47)
+++ pkg/patchworkData/man/chr22.mark.Rd	2011-12-14 11:27:51 UTC (rev 48)
@@ -1,5 +1,6 @@
 \name{chr22.mark}
 \alias{chr22.mark}
+\alias{gc}
 \docType{data}
 
 \title{
@@ -33,10 +34,10 @@
 %}
 
 \seealso{
-  The function \code{\link{patchwork.readChroms}} uses this data.
+  The function \code{\link[patchwork]{patchwork.readChroms}} uses this data.
 }
 
 %\examples{
 %}
 
-%\keyword{datasets}
\ No newline at end of file
+\keyword{datasets}
\ No newline at end of file

Modified: pkg/patchworkData/man/chr3.mark.Rd
===================================================================
--- pkg/patchworkData/man/chr3.mark.Rd	2011-12-13 15:57:27 UTC (rev 47)
+++ pkg/patchworkData/man/chr3.mark.Rd	2011-12-14 11:27:51 UTC (rev 48)
@@ -1,5 +1,6 @@
 \name{chr3.mark}
 \alias{chr3.mark}
+\alias{gc}
 \docType{data}
 
 \title{
@@ -33,10 +34,10 @@
 %}
 
 \seealso{
-  The function \code{\link{patchwork.readChroms}} uses this data.
+  The function \code{\link[patchwork]{patchwork.readChroms}} uses this data.
 }
 
 %\examples{
 %}
 
-%\keyword{datasets}
\ No newline at end of file
+\keyword{datasets}
\ No newline at end of file

Modified: pkg/patchworkData/man/chr4.mark.Rd
===================================================================
--- pkg/patchworkData/man/chr4.mark.Rd	2011-12-13 15:57:27 UTC (rev 47)
+++ pkg/patchworkData/man/chr4.mark.Rd	2011-12-14 11:27:51 UTC (rev 48)
@@ -1,5 +1,6 @@
 \name{chr4.mark}
 \alias{chr4.mark}
+\alias{gc}
 \docType{data}
 
 \title{
@@ -33,10 +34,10 @@
 %}
 
 \seealso{
-  The function \code{\link{patchwork.readChroms}} uses this data.
+  The function \code{\link[patchwork]{patchwork.readChroms}} uses this data.
 }
 
 %\examples{
 %}
 
-%\keyword{datasets}
\ No newline at end of file
+\keyword{datasets}
\ No newline at end of file

Modified: pkg/patchworkData/man/chr5.mark.Rd
===================================================================
--- pkg/patchworkData/man/chr5.mark.Rd	2011-12-13 15:57:27 UTC (rev 47)
+++ pkg/patchworkData/man/chr5.mark.Rd	2011-12-14 11:27:51 UTC (rev 48)
@@ -1,5 +1,6 @@
 \name{chr5.mark}
 \alias{chr5.mark}
+\alias{gc}
 \docType{data}
 
 \title{
@@ -33,10 +34,10 @@
 %}
 
 \seealso{
-  The function \code{\link{patchwork.readChroms}} uses this data.
+  The function \code{\link[patchwork]{patchwork.readChroms}} uses this data.
 }
 
 %\examples{
 %}
 
-%\keyword{datasets}
\ No newline at end of file
+\keyword{datasets}
\ No newline at end of file

Modified: pkg/patchworkData/man/chr6.mark.Rd
===================================================================
--- pkg/patchworkData/man/chr6.mark.Rd	2011-12-13 15:57:27 UTC (rev 47)
+++ pkg/patchworkData/man/chr6.mark.Rd	2011-12-14 11:27:51 UTC (rev 48)
@@ -1,5 +1,6 @@
 \name{chr6.mark}
 \alias{chr6.mark}
+\alias{gc}
 \docType{data}
 
 \title{
@@ -33,10 +34,10 @@
 %}
 
 \seealso{
-  The function \code{\link{patchwork.readChroms}} uses this data.
+  The function \code{\link[patchwork]{patchwork.readChroms}} uses this data.
 }
 
 %\examples{
 %}
 
-%\keyword{datasets}
\ No newline at end of file
+\keyword{datasets}
\ No newline at end of file

Modified: pkg/patchworkData/man/chr7.mark.Rd
===================================================================
--- pkg/patchworkData/man/chr7.mark.Rd	2011-12-13 15:57:27 UTC (rev 47)
+++ pkg/patchworkData/man/chr7.mark.Rd	2011-12-14 11:27:51 UTC (rev 48)
@@ -1,5 +1,6 @@
 \name{chr7.mark}
 \alias{chr7.mark}
+\alias{gc}
 \docType{data}
 
 \title{
@@ -33,10 +34,10 @@
 %}
 
 \seealso{
-  The function \code{\link{patchwork.readChroms}} uses this data.
+  The function \code{\link[patchwork]{patchwork.readChroms}} uses this data.
 }
 
 %\examples{
 %}
 
-%\keyword{datasets}
\ No newline at end of file
+\keyword{datasets}
\ No newline at end of file

Modified: pkg/patchworkData/man/chr8.mark.Rd
===================================================================
--- pkg/patchworkData/man/chr8.mark.Rd	2011-12-13 15:57:27 UTC (rev 47)
+++ pkg/patchworkData/man/chr8.mark.Rd	2011-12-14 11:27:51 UTC (rev 48)
@@ -1,5 +1,6 @@
 \name{chr8.mark}
 \alias{chr8.mark}
+\alias{gc}
 \docType{data}
 
 \title{
@@ -33,10 +34,10 @@
 %}
 
 \seealso{
-  The function \code{\link{patchwork.readChroms}} uses this data.
+  The function \code{\link[patchwork]{patchwork.readChroms}} uses this data.
 }
 
 %\examples{
 %}
 
-%\keyword{datasets}
\ No newline at end of file
+\keyword{datasets}
\ No newline at end of file

Modified: pkg/patchworkData/man/chr9.mark.Rd
===================================================================
--- pkg/patchworkData/man/chr9.mark.Rd	2011-12-13 15:57:27 UTC (rev 47)
+++ pkg/patchworkData/man/chr9.mark.Rd	2011-12-14 11:27:51 UTC (rev 48)
@@ -1,5 +1,6 @@
 \name{chr9.mark}
 \alias{chr9.mark}
+\alias{gc}
 \docType{data}
 
 \title{
@@ -33,10 +34,10 @@
 %}
 
 \seealso{
-  The function \code{\link{patchwork.readChroms}} uses this data.
+  The function \code{\link[patchwork]{patchwork.readChroms}} uses this data.
 }
 
 %\examples{
 %}
 
-%\keyword{datasets}
\ No newline at end of file
+\keyword{datasets}
\ No newline at end of file

Modified: pkg/patchworkData/man/chrX.mark.Rd
===================================================================
--- pkg/patchworkData/man/chrX.mark.Rd	2011-12-13 15:57:27 UTC (rev 47)
+++ pkg/patchworkData/man/chrX.mark.Rd	2011-12-14 11:27:51 UTC (rev 48)
@@ -1,5 +1,6 @@
 \name{chrX.mark}
 \alias{chrX.mark}
+\alias{gc}
 \docType{data}
 
 \title{
@@ -33,10 +34,10 @@
 %}
 
 \seealso{
-  The function \code{\link{patchwork.readChroms}} uses this data.
+  The function \code{\link[patchwork]{patchwork.readChroms}} uses this data.
 }
 
 %\examples{
 %}
 
-%\keyword{datasets}
\ No newline at end of file
+\keyword{datasets}
\ No newline at end of file

Modified: pkg/patchworkData/man/chrY.mark.Rd
===================================================================
--- pkg/patchworkData/man/chrY.mark.Rd	2011-12-13 15:57:27 UTC (rev 47)
+++ pkg/patchworkData/man/chrY.mark.Rd	2011-12-14 11:27:51 UTC (rev 48)
@@ -1,5 +1,6 @@
 \name{chrY.mark}
 \alias{chrY.mark}
+\alias{gc}
 \docType{data}
 
 \title{
@@ -33,10 +34,10 @@
 %}
 
 \seealso{
-  The function \code{\link{patchwork.readChroms}} uses this data.
+  The function \code{\link[patchwork]{patchwork.readChroms}} uses this data.
 }
 
 %\examples{
 %}
 
-%\keyword{datasets}
\ No newline at end of file
+\keyword{datasets}
\ No newline at end of file

Modified: pkg/patchworkData/man/commonSnps132.Rd
===================================================================
--- pkg/patchworkData/man/commonSnps132.Rd	2011-12-13 15:57:27 UTC (rev 47)
+++ pkg/patchworkData/man/commonSnps132.Rd	2011-12-14 11:27:51 UTC (rev 48)
@@ -1,5 +1,6 @@
 \name{commonSnps132}
 \alias{commonSnps132}
+\alias{dbSnp}
 \docType{data}
 
 \title{
@@ -31,7 +32,7 @@
 %}
 
 \seealso{
-  The function \code{\link{patchwork.alleledata}} uses this data.
+  The function \code{\link[patchwork]{patchwork.alleledata}} uses this data.
 }
 
 %\examples{

Modified: pkg/patchworkData/man/datasolexa.Rd
===================================================================
--- pkg/patchworkData/man/datasolexa.Rd	2011-12-13 15:57:27 UTC (rev 47)
+++ pkg/patchworkData/man/datasolexa.Rd	2011-12-14 11:27:51 UTC (rev 48)
@@ -31,7 +31,7 @@
 %}
 
 \seealso{
-  The function \code{\link{patchwork.applyref}} uses this data.
+  The function \code{\link[patchwork]{patchwork.applyref}} uses this data.
 }
 
 %\examples{

Modified: pkg/patchworkData/man/datasolid.Rd
===================================================================
--- pkg/patchworkData/man/datasolid.Rd	2011-12-13 15:57:27 UTC (rev 47)
+++ pkg/patchworkData/man/datasolid.Rd	2011-12-14 11:27:51 UTC (rev 48)
@@ -31,7 +31,7 @@
 %}
 
 \seealso{
-  The function \code{\link{patchwork.applyref}} uses this data.
+  The function \code{\link[patchwork]{patchwork.applyref}} uses this data.
 }
 
 %\examples{

Modified: pkg/patchworkData/man/ideogram.Rd
===================================================================
--- pkg/patchworkData/man/ideogram.Rd	2011-12-13 15:57:27 UTC (rev 47)
+++ pkg/patchworkData/man/ideogram.Rd	2011-12-14 11:27:51 UTC (rev 48)
@@ -34,7 +34,7 @@
 %}
 
 \seealso{
-  The function \code{\link{patchwork.CNA}}, and other functions withing the package,
+  The function \code{\link[patchwork]{patchwork.CNA}}, and other functions withing the package,
   uses this data.
 }

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