[Mboost-commits] r807 - in pkg/mboostPatch: R inst man

[noreply at r-forge.r-project.org]

Author: hofner
Date: 2014-11-11 16:14:01 +0100 (Tue, 11 Nov 2014)
New Revision: 807

Modified:
   pkg/mboostPatch/R/stabsel.R
   pkg/mboostPatch/inst/CITATION
   pkg/mboostPatch/man/baselearners.Rd
   pkg/mboostPatch/man/confint.Rd
   pkg/mboostPatch/man/stabsel.Rd
Log:
- added and updated references
  (for stability selection, confidence intervals and constrained regression)
- fixed CITATION
- updated stabsel so that a significance level is returned
  (when using stabs >= 0.2-0)

Modified: pkg/mboostPatch/R/stabsel.R
===================================================================
--- pkg/mboostPatch/R/stabsel.R	2014-11-10 17:57:39 UTC (rev 806)
+++ pkg/mboostPatch/R/stabsel.R	2014-11-11 15:14:01 UTC (rev 807)
@@ -74,7 +74,7 @@
     if (extends(class(x), "glmboost"))
         rownames(phat) <- variable.names(x)
     ret <- list(phat = phat, selected = which((mm <- apply(phat, 1, max)) >= cutoff),
-                max = mm, cutoff = cutoff, q = q, PFER = PFER,
+                max = mm, cutoff = cutoff, q = q, PFER = PFER, p = p,
                 sampling.type = sampling.type, assumption = assumption,
                 call = cll)
     ret$call[[1]] <- as.name("stabsel")

Modified: pkg/mboostPatch/inst/CITATION
===================================================================
--- pkg/mboostPatch/inst/CITATION	2014-11-10 17:57:39 UTC (rev 806)
+++ pkg/mboostPatch/inst/CITATION	2014-11-11 15:14:01 UTC (rev 807)
@@ -6,7 +6,7 @@
      vers <- paste("R package version", desc$Version)
 
      citEntry(entry="Manual",
-              title = "Model-Based Boosting",
+              title = "{mboost}: Model-Based Boosting",
               author = personList(as.person("Torsten Hothorn"),
                                   as.person("Peter Buehlmann"),
                                   as.person("Thomas Kneib"),

Modified: pkg/mboostPatch/man/baselearners.Rd
===================================================================
--- pkg/mboostPatch/man/baselearners.Rd	2014-11-10 17:57:39 UTC (rev 806)
+++ pkg/mboostPatch/man/baselearners.Rd	2014-11-11 15:14:01 UTC (rev 807)
@@ -490,9 +490,9 @@
   Monotonicity-Constrained Species Distribution Models,
   \emph{Ecology}, \bold{92}, 1895--1901.
 
-  Benjamin Hofner, Thomas Kneib and Torsten Hothorn (2014),
-  A Unified Framework of Constrained Regression. Accepted for publication
-  in \emph{Statistics & Computing}.\cr
+  Benjamin Hofner, Thomas Kneib and Torsten Hothorn (2014), A Unified
+  Framework of Constrained Regression. \emph{Statistics & Computing}.
+  Online first. DOI:10.1007/s11222-014-9520-y.\cr
   Preliminary version: \url{http://arxiv.org/abs/1403.7118}
 
   Thomas Kneib, Torsten Hothorn and Gerhard Tutz (2009), Variable

Modified: pkg/mboostPatch/man/confint.Rd
===================================================================
--- pkg/mboostPatch/man/confint.Rd	2014-11-10 17:57:39 UTC (rev 806)
+++ pkg/mboostPatch/man/confint.Rd	2014-11-11 15:14:01 UTC (rev 807)
@@ -118,8 +118,8 @@
 }
 \references{
   Benjamin Hofner, Thomas Kneib and Torsten Hothorn (2014),
-  A Unified Framework of Constrained Regression. Accepted for publication
-  in \emph{Statistics & Computing}.
+  A Unified Framework of Constrained Regression. \emph{Statistics &
+    Computing}. Online first. DOI:10.1007/s11222-014-9520-y.
 
   Preliminary version: \url{http://arxiv.org/abs/1403.7118}
 }

Modified: pkg/mboostPatch/man/stabsel.Rd
===================================================================
--- pkg/mboostPatch/man/stabsel.Rd	2014-11-10 17:57:39 UTC (rev 806)
+++ pkg/mboostPatch/man/stabsel.Rd	2014-11-11 15:14:01 UTC (rev 807)
@@ -66,7 +66,8 @@
 }
 \details{
 
-  For details see \code{\link[stabs]{stabsel}} in package \pkg{stabs}.
+  For details see \code{\link[stabs]{stabsel}} in package \pkg{stabs}
+  and Hofner et al. (2014).
 
 }
 \value{
@@ -86,6 +87,11 @@
 }
 \references{
 
+  B. Hofner, L. Boccuto and M. Goeker (2014),
+  Controlling false discoveries in high-dimensional situations: Boosting
+  with stability selection. \emph{Technical Report}, arXiv:1411.1285.\cr
+  \url{http://arxiv.org/abs/1411.1285}.
+
   N. Meinshausen and P. Buehlmann (2010), Stability selection.
   \emph{Journal of the Royal Statistical Society, Series B},
   \bold{72}, 417--473.