[Mattice-commits] r109 - pkg

[noreply at r-forge.r-project.org]

Author: andrew_hipp
Date: 2008-12-23 22:57:07 +0100 (Tue, 23 Dec 2008)
New Revision: 109

Modified:
   pkg/TODO
Log:
update todo

Modified: pkg/TODO
===================================================================
--- pkg/TODO	2008-12-23 21:56:29 UTC (rev 108)
+++ pkg/TODO	2008-12-23 21:57:07 UTC (rev 109)
@@ -1,7 +1,7 @@
 1. DONE: make allPossibleRegimes more efficient when maxNodes < length(nodes)
 2. is the k-matrix a sensible statistic? fix it so it works on the revised batchHansen; average weight, or drop it
 3. DONE: change paintBranches so that it automatically adds the root and knows what to do if it is handed a list of node vectors instead of a vector of nodes
-4. make plot.ouSim smart enough to paint the branches according to the theta vector if no colors are provided
+4. DONE: make plot.ouSim smart enough to paint the branches according to the theta vector if no colors are provided
 5. make a "simulate" method for a hansenBatch object that simulates the data using model-averaged parameters (including theta)
 6. DONE: make paintBranches return a complete regime ready to plug into hansen, and modify calling functions accordingly
 7. give plot.ouSim a way to highlight or circle or otherwise set off changeNodes