[IPSUR-commits] r152 - pkg/IPSUR/inst/doc www/book www/book/download

noreply at r-forge.r-project.org noreply at r-forge.r-project.org
Thu Jan 21 05:52:52 CET 2010


Author: gkerns
Date: 2010-01-21 05:52:46 +0100 (Thu, 21 Jan 2010)
New Revision: 152

Added:
   www/book/download/IPSUR.bib
Removed:
   www/book/download/IPSUR.pdf
Modified:
   pkg/IPSUR/inst/doc/IPSUR.Rnw
   www/book/download/IPSUR.lyx
   www/book/download/IPSUR.zip
   www/book/downloads.php
Log:
updated the printed version and source code


Modified: pkg/IPSUR/inst/doc/IPSUR.Rnw
===================================================================
--- pkg/IPSUR/inst/doc/IPSUR.Rnw	2010-01-20 13:22:27 UTC (rev 151)
+++ pkg/IPSUR/inst/doc/IPSUR.Rnw	2010-01-21 04:52:46 UTC (rev 152)
@@ -34,7 +34,7 @@
  {hyperref}
 \hypersetup{pdftitle={Introduction to Probability and Statistics Using R},
  pdfauthor={G. Jay Kerns},
- linkcolor=blue,  citecolor=black, urlcolor=blue}
+ linkcolor=blue,  citecolor=blue, urlcolor=blue}
  
 \makeatletter
 
@@ -155,10 +155,15 @@
 
 
 %%  Sweave specific commands
-% make the input blue
+% make the input blue, output red
+\DefineVerbatimEnvironment{Soutput}{Verbatim}{formatcom=\color{blue}}
 \DefineVerbatimEnvironment{Sinput}{Verbatim}{fontshape=sl, formatcom=\color{red}}
-% make the output red
-\DefineVerbatimEnvironment{Soutput}{Verbatim}{formatcom=\color{blue}}
+% make the output black
+%\DefineVerbatimEnvironment{Soutput}{Verbatim}{formatcom=\color{black}}
+%\DefineVerbatimEnvironment{Sinput}{Verbatim}{fontshape=sl, formatcom=\color{black}}
+
+
+
 % get rid of extra Sweave space
 \fvset{listparameters={\setlength{\topsep}{0pt}}}
 \renewenvironment{Schunk}{\vspace{\topsep}}{\vspace{\topsep}}  
@@ -1398,7 +1403,7 @@
 \ref{cha:R-Session-Information} for an example.
 \end{enumerate}
 
-\section{External resources}
+\section{External Resources}
 
 There is a mountain of information on the Internet about \textsf{R}.
 Below are a few of the important ones.
@@ -1424,7 +1429,7 @@
 queries. 
 \end{description}
 
-\section{Other tips}
+\section{Other Tips}
 
 It is unnecessary to retype commands repeatedly, since \textsf{R}
 remembers what you have recently entered on the command line. On the

Added: www/book/download/IPSUR.bib
===================================================================
--- www/book/download/IPSUR.bib	                        (rev 0)
+++ www/book/download/IPSUR.bib	2010-01-21 04:52:46 UTC (rev 152)
@@ -0,0 +1,946 @@
+% This file was created with JabRef 2.3.1.
+% Encoding: UTF-8
+
+ at MANUAL{foreign,
+  title = {foreign: Read Data Stored by Minitab, S, SAS, SPSS, Stata, Systat,
+	dBase, ...},
+  author = {R-core members and Saikat DebRoy and Roger Bivand and others: see
+	COPYRIGHTS file in the sources.},
+  year = {2010},
+  note = {R package version 0.8-39},
+  owner = {jay},
+  timestamp = {2010.01.05},
+  url = {http://CRAN.R-project.org/package=foreign}
+}
+
+ at MANUAL{rgl,
+  title = {rgl: 3D visualization device system (OpenGL)},
+  author = {Daniel Adler and Duncan Murdoch},
+  year = {2009},
+  note = {R package version 0.87},
+  owner = {jay},
+  timestamp = {2009.12.30},
+  url = {http://CRAN.R-project.org/package=rgl}
+}
+
+ at BOOK{Agresti2002,
+  title = {Categorical Data Analysis},
+  publisher = {Wiley},
+  year = {2002},
+  author = {Alan Agresti},
+  owner = {jay},
+  timestamp = {2009.12.30}
+}
+
+ at ARTICLE{Agresti1998,
+  author = {Agresti, A. and Coull, B. A.},
+  title = {Approximate is better than "exact" for interval estimation of binomial
+	proportions},
+  journal = {The American Statistician},
+  year = {1998},
+  volume = {52},
+  pages = {119--126},
+  owner = {jay},
+  timestamp = {2009.12.30}
+}
+
+ at MANUAL{mnormt,
+  title = {mnormt: The multivariate normal and t distributions},
+  author = {Fortran code by Alan Genz and R code by Adelchi Azzalini},
+  year = {2009},
+  note = {R package version 1.3-3},
+  owner = {jay},
+  timestamp = {2009.12.30},
+  url = {http://CRAN.R-project.org/package=mnormt}
+}
+
+ at BOOK{Apostol1967,
+  title = {Calculus},
+  publisher = {Wiley},
+  year = {1967},
+  author = {Apostol, Tom M.},
+  volume = {II},
+  edition = {Second},
+  owner = {jay},
+  timestamp = {2009.12.30}
+}
+
+ at BOOK{ApostolI1967,
+  title = {Calculus},
+  publisher = {Wiley},
+  year = {1967},
+  author = {Tom M. Apostol},
+  volume = {I},
+  edition = {Second},
+  owner = {jay},
+  timestamp = {2009.12.30}
+}
+
+ at BOOK{Ash2000,
+  title = {Probability \& Measure Theory},
+  publisher = {Harcourt Academic Press},
+  year = {2000},
+  author = {Robert B. Ash and Catherine Doleans-Dade},
+  owner = {jay},
+  timestamp = {2009.12.30}
+}
+
+ at BOOK{Bickel2001,
+  title = {Mathematical Statistics},
+  publisher = {Prentice Hall},
+  year = {2001},
+  author = {Bickel, Peter J. and Doksum, Kjell A.},
+  volume = {I},
+  owner = {jay},
+  timestamp = {2009.12.30}
+}
+
+ at BOOK{Billingsley1995,
+  title = {Probability and Measure},
+  publisher = {Wiley Interscience},
+  year = {1995},
+  author = {Patrick Billingsley},
+  owner = {jay},
+  timestamp = {2009.12.30}
+}
+
+ at MANUAL{emdbook,
+  title = {emdbook: Ecological models and data (book support)},
+  author = {Ben Bolker},
+  year = {2009},
+  note = {R package version 1.2},
+  owner = {jay},
+  timestamp = {2009.12.30},
+  url = {http://CRAN.R-project.org/package=emdbook}
+}
+
+ at BOOK{Bowerman2004,
+  title = {Forecasting, Time Series, and Regression: An Applied Approach},
+  publisher = {South-Western College Pub},
+  year = {2004},
+  author = {Bowerman, Bruce L. and O'Connell, Richard and Koehler, Anne},
+  owner = {jay},
+  timestamp = {2009.12.30}
+}
+
+ at BOOK{Brockwell1991,
+  title = {Time Series and Forecasting Methods},
+  publisher = {Springer},
+  year = {1991},
+  author = {Brockwell, P. J. and Davis, R. A.},
+  pages = {555},
+  edition = {Second},
+  owner = {jay},
+  timestamp = {2010.01.01}
+}
+
+ at BOOK{Carothers2000,
+  title = {Real Analysis},
+  publisher = {Cambridge University Press},
+  year = {2000},
+  author = {Neal L. Carothers},
+  owner = {jay},
+  timestamp = {2009.12.30}
+}
+
+ at BOOK{Casella2002,
+  title = {Statistical Inference},
+  publisher = {Duxbury Press},
+  year = {2002},
+  author = {George Casella and Roger L. Berger},
+  owner = {jay},
+  timestamp = {2009.12.30}
+}
+
+ at MANUAL{combinat,
+  title = {combinat: combinatorics utilities},
+  author = {Scott Chasalow},
+  year = {2009},
+  note = {R package version 0.0-7},
+  owner = {jay},
+  timestamp = {2009.12.30},
+  url = {http://CRAN.R-project.org/package=combinat}
+}
+
+ at BOOK{Cinlar1975,
+  title = {Introduction to Stochastic Processes},
+  publisher = {Prentice Hall},
+  year = {1975},
+  author = {Cinlar, Erhan},
+  owner = {jay},
+  timestamp = {2009.12.30}
+}
+
+ at BOOK{Cleveland1994,
+  title = {The Elements of Graphing Data},
+  publisher = {Hobart Press},
+  year = {1994},
+  author = {Cleveland, William S.},
+  owner = {jay},
+  timestamp = {2009.12.31}
+}
+
+ at BOOK{Dalgaard2008,
+  title = {Introductory Statistics with R},
+  publisher = {Springer},
+  year = {2008},
+  author = {Peter Dalgaard},
+  owner = {jay},
+  timestamp = {2009.12.30},
+  url = {http://staff.pubhealth.ku.dk/~pd/ISwR.html}
+}
+
+ at BOOK{Davison1997,
+  title = {Bootstrap Methods and Their Applications},
+  publisher = {Cambridge University Press},
+  year = {1997},
+  author = {Davison, A. C. and Hinkley, D. V.},
+  owner = {jay},
+  timestamp = {2009.12.30}
+}
+
+ at ARTICLE{DiCiccio1996,
+  author = {DiCiccio, Thomas J. and Efron, Bradley},
+  title = {Bootstrap Confidence Intervals},
+  journal = {Statistical Science},
+  year = {1996},
+  volume = {11},
+  pages = {189--228},
+  owner = {jay},
+  timestamp = {2009.12.30}
+}
+
+ at MANUAL{Dimitriadoue1071,
+  title = {e1071: Misc Functions of the Department of Statistics (e1071), TU
+	Wien},
+  author = {Evgenia Dimitriadou and Kurt Hornik and Friedrich Leisch and David
+	Meyer and Andreas Weingessel},
+  year = {2009},
+  note = {R package version 1.5-22},
+  owner = {jay},
+  timestamp = {2009.12.30},
+  url = {http://CRAN.R-project.org/package=e1071}
+}
+
+ at BOOK{Durrett1999,
+  title = {Essentials of Stochastic Processes},
+  publisher = {Springer},
+  year = {1999},
+  author = {Durrett, Rick},
+  owner = {jay},
+  timestamp = {2009.12.30}
+}
+
+ at BOOK{Durrett1996,
+  title = {Probability: Theory and Examples},
+  publisher = {Duxbury Press},
+  year = {1996},
+  author = {Richard Durrett},
+  owner = {jay},
+  timestamp = {2009.12.30}
+}
+
+ at ARTICLE{Dutangactuar,
+  author = {Christophe Dutang and Vincent Goulet and Mathieu Pigeon},
+  title = {actuar: An R Package for Actuarial Science},
+  journal = {Journal of Statistical Software},
+  year = {2008},
+  note = {to appear},
+  owner = {jay},
+  timestamp = {2009.12.30}
+}
+
+ at BOOK{Everitt2007,
+  title = {An R and S-Plus Companion to Multivariate Analysis},
+  publisher = {Springer},
+  year = {2007},
+  author = {Brian Everitt},
+  owner = {jay},
+  timestamp = {2009.12.30}
+}
+
+ at BOOK{Folland1999,
+  title = {Real Analysis: Modern Techniques and Their Applications},
+  publisher = {Wiley},
+  year = {1999},
+  author = {Gerald B. Folland},
+  owner = {jay},
+  timestamp = {2009.12.30}
+}
+
+ at MANUAL{car,
+  title = {car: Companion to Applied Regression},
+  author = {John Fox},
+  year = {2009},
+  note = {R package version 1.2-16},
+  owner = {jay},
+  timestamp = {2009.12.30},
+  url = {http://CRAN.R-project.org/package=car}
+}
+
+ at BOOK{Fox2002,
+  title = {An R and S Plus Companion to Applied Regression},
+  publisher = {Sage},
+  year = {2002},
+  author = {Fox, John},
+  owner = {jay},
+  timestamp = {2010.01.18}
+}
+
+ at BOOK{Fox1997,
+  title = {Applied Regression Analysis, Linear Models, and Related Methods},
+  publisher = {Sage},
+  year = {1997},
+  author = {Fox, John},
+  owner = {jay},
+  timestamp = {2010.01.18}
+}
+
+ at MANUAL{Foxrcmdr,
+  title = {Rcmdr: R Commander},
+  author = {John Fox and with contributions from Liviu Andronic and Michael Ash
+	and Theophilius Boye and Stefano Calza and Andy Chang and Philippe
+	Grosjean and Richard Heiberger and G. Jay Kerns and Renaud Lancelot
+	and Matthieu Lesnoff and Uwe Ligges and Samir Messad and Martin Maechler
+	and Robert Muenchen and Duncan Murdoch and Erich Neuwirth and Dan
+	Putler and Brian Ripley and Miroslav Ristic and Peter Wolf.},
+  year = {2009},
+  note = {R package version 1.5-4},
+  owner = {jay},
+  timestamp = {2009.12.30},
+  url = {http://CRAN.R-project.org/package=Rcmdr}
+}
+
+ at BOOK{Friendly2000,
+  title = {Visualizing Categorical Data},
+  publisher = {SAS Publishing},
+  year = {2000},
+  author = {Michael Friendly},
+  owner = {jay},
+  timestamp = {2009.12.30}
+}
+
+ at BOOK{Gelman2004,
+  title = {Bayesian Data Analysis},
+  publisher = {CRC Press},
+  year = {2004},
+  author = {Andrew Gelman and John B. Carlin and Hal S. Stern and Donald B. Rubin},
+  owner = {jay},
+  timestamp = {2009.12.30}
+}
+
+ at MANUAL{Genzmvtnorm,
+  title = {mvtnorm: Multivariate Normal and t Distributions},
+  author = {Alan Genz and Frank Bretz and Tetsuhisa Miwa and Xuefei Mi and Friedrich
+	Leisch and Fabian Scheipl and Torsten Hothorn},
+  year = {2009},
+  note = {R package version 0.9-8},
+  owner = {jay},
+  timestamp = {2009.12.30},
+  url = {http://CRAN.R-project.org/package=mvtnorm}
+}
+
+ at MANUAL{ryacas,
+  title = {Ryacas: R interface to the yacas computer algebra system},
+  author = {Rob Goedman and Gabor Grothendieck and Søren Højsgaard and Ayal Pinkus},
+  year = {2008},
+  note = {R package version 0.2-9},
+  owner = {jay},
+  timestamp = {2009.12.30},
+  url = {http://ryacas.googlecode.com}
+}
+
+ at ARTICLE{Gorjanc2008,
+  author = {Gorjanc, Gregor},
+  title = {Using Sweave with LyX},
+  journal = {R News},
+  year = {2008},
+  volume = {1},
+  pages = {2--9},
+  owner = {jay},
+  timestamp = {2010.01.18}
+}
+
+ at ARTICLE{exams,
+  author = {Bettina Gr\"un and Achim Zeileis},
+  title = {Automatic Generation of Exams in {R}},
+  journal = {Journal of Statistical Software},
+  year = {2009},
+  volume = {29},
+  pages = {1--14},
+  number = {10},
+  owner = {jay},
+  timestamp = {2009.12.30},
+  url = {http://www.jstatsoft.org/v29/i10/}
+}
+
+ at BOOK{Grinstead1997,
+  title = {Introduction to Probability},
+  publisher = {American Mathematical Society},
+  year = {1997},
+  author = {Grinstead, Charles M. and Snell, J. Laurie},
+  owner = {jay},
+  timestamp = {2010.01.04},
+  url = {http://www.dartmouth.edu/~chance/}
+}
+
+ at MANUAL{Harrellhmisc,
+  title = {Hmisc: Harrell Miscellaneous},
+  author = {Harrell, Jr, Frank E and with contributions from many other users.},
+  year = {2009},
+  note = {R package version 3.7-0},
+  owner = {jay},
+  timestamp = {2009.12.30},
+  url = {http://CRAN.R-project.org/package=Hmisc}
+}
+
+ at MANUAL{Heibergerhh,
+  title = {HH: Statistical Analysis and Data Display: Heiberger and Holland},
+  author = {Richard M. Heiberger},
+  year = {2009},
+  note = {R package version 2.1-32},
+  owner = {jay},
+  timestamp = {2009.12.30},
+  url = {http://CRAN.R-project.org/package=HH}
+}
+
+ at BOOK{Heiberger2004,
+  title = {Statistical Analysis and Data Display: An Intermediate Course with
+	Examples in S-Plus, R, and SAS},
+  publisher = {Springer},
+  year = {2004},
+  author = {Heiberger, Richard M. and Holland, Burt},
+  owner = {jay},
+  timestamp = {2009.12.30},
+  url = {http://astro.temple.edu/~rmh/HH/}
+}
+
+ at BOOK{Hogg2005,
+  title = {Introduction to Mathematical Statistics},
+  publisher = {Pearson Prentice Hall},
+  year = {2005},
+  author = {Hogg, Robert V. and McKean, Joseph W. and Craig, Allen T.},
+  owner = {jay},
+  timestamp = {2009.12.30}
+}
+
+ at BOOK{Hogg2006,
+  title = {Probability and Statistical Inference},
+  publisher = {Pearson Prentice Hall},
+  year = {2006},
+  author = {Robert V. Hogg and Elliot A. Tanis},
+  owner = {jay},
+  timestamp = {2009.12.30}
+}
+
+ at MANUAL{Hothornexactranktests,
+  title = {exactRankTests: Exact Distributions for Rank and Permutation Tests},
+  author = {Torsten Hothorn and Kurt Hornik},
+  year = {2006},
+  note = {R package version 0.8-18},
+  owner = {jay},
+  timestamp = {2009.12.30}
+}
+
+ at ARTICLE{Hothorn2008,
+  author = {Hothorn, Torsten and Hornik, Kurt and van-de-Wiel, Mark A. and Zeileis,
+	Achim},
+  title = {Implementing a class of permutation tests: The coin package},
+  journal = {Journal of Statistical Software},
+  year = {2008},
+  volume = {28},
+  pages = {1--23},
+  owner = {jay},
+  timestamp = {2009.12.30}
+}
+
+ at BOOK{Johnson1997,
+  title = {Discrete Multivariate Distributions},
+  publisher = {Wiley},
+  year = {1997},
+  author = {Johnson, Norman L. and Kotz, Samuel and Balakrishnan, N.},
+  owner = {jay},
+  timestamp = {2010.01.04}
+}
+
+ at BOOK{Johnson1995,
+  title = {Continuous Univariate Distributions},
+  publisher = {Wiley},
+  year = {1995},
+  author = {Johnson, Norman L. and Kotz, Samuel and Balakrishnan, N.},
+  volume = {2},
+  edition = {Second},
+  owner = {jay},
+  timestamp = {2010.01.04}
+}
+
+ at BOOK{Johnson1994,
+  title = {Continuous Univariate Distributions},
+  publisher = {Wiley},
+  year = {1994},
+  author = {Johnson, Norman L. and Kotz, Samuel and Balakrishnan, N.},
+  volume = {1},
+  edition = {Second},
+  owner = {jay},
+  timestamp = {2010.01.04}
+}
+
+ at BOOK{Johnson1993,
+  title = {Univariate Discrete Distributions},
+  publisher = {Wiley},
+  year = {1993},
+  author = {Johnson, Norman L. and Kotz, Samuel and Kemp, Adrienne W.},
+  edition = {Second},
+  owner = {jay},
+  timestamp = {2010.01.04}
+}
+
+ at MISC{howmanyfish,
+  author = {Johnson, Roger W.},
+  title = {How Many Fish are in the Pond?},
+  owner = {jay},
+  timestamp = {2009.12.30},
+  url = {http://www.rsscse.org.uk/ts/gtb/johnson3.pdf}
+}
+
+ at MANUAL{Kernsprob,
+  title = {prob: Elementary Probability on Finite Sample Spaces},
+  author = {G. Jay Kerns},
+  year = {2009},
+  note = {R package version 0.9-2},
+  owner = {jay},
+  timestamp = {2009.12.30},
+  url = {http://CRAN.R-project.org/package=prob}
+}
+
+ at MANUAL{Kernsrcmdr,
+  title = {RcmdrPlugin.IPSUR: An IPSUR Plugin for the R Commander},
+  author = {G. Jay Kerns and with contributions by Theophilius Boye and Tyler
+	Drombosky and adapted from the work of John Fox et al.},
+  year = {2009},
+  note = {R package version 0.1-6},
+  owner = {jay},
+  timestamp = {2009.12.30},
+  url = {http://CRAN.R-project.org/package=RcmdrPlugin.IPSUR}
+}
+
+ at BOOK{Kotz2000,
+  title = {Continuous Multivariate Distributions},
+  publisher = {Wiley},
+  year = {2000},
+  author = {Kotz, Samuel and Balakrishnan, N. and Johnson, Norman L.},
+  volume = {1: Models and Applications},
+  edition = {Second},
+  owner = {jay},
+  timestamp = {2010.01.04}
+}
+
+ at MANUAL{odfweave,
+  title = {odfWeave: Sweave processing of Open Document Format (ODF) files},
+  author = {Max Kuhn and Steve Weaston},
+  year = {2009},
+  note = {R package version 0.7.10},
+  owner = {jay},
+  timestamp = {2009.12.30}
+}
+
+ at BOOK{Lavine2009,
+  title = {Introduction to Statistical Thought},
+  publisher = {Lavine, Michael},
+  year = {2009},
+  author = {Lavine, Michael},
+  owner = {jay},
+  timestamp = {2009.12.30},
+  url = {http://www.math.umass.edu/~lavine/Book/book.html}
+}
+
+ at BOOK{Lee1997,
+  title = {Bayesian Statistics: An Introduction},
+  publisher = {Wiley},
+  year = {1997},
+  author = {Peter M. Lee},
+  owner = {jay},
+  timestamp = {2009.12.30}
+}
+
+ at BOOK{Lehmann1986,
+  title = {Testing Statistical Hypotheses},
+  publisher = {Springer-Verlag},
+  year = {1986},
+  author = {Lehmann, E. L.},
+  owner = {jay},
+  timestamp = {2009.12.30}
+}
+
+ at BOOK{Lehmann1998,
+  title = {Theory of Point Estimation},
+  publisher = {Springer},
+  year = {1998},
+  author = {E. L. Lehmann and George Casella},
+  owner = {jay},
+  timestamp = {2009.12.30}
+}
+
+ at ARTICLE{Ligges2006,
+  author = {Uwe Ligges},
+  title = {Accessing the Sources},
+  journal = {R News},
+  year = {2006},
+  volume = {6},
+  pages = {43-45},
+  owner = {jay},
+  timestamp = {2009.12.30}
+}
+
+ at ARTICLE{Liggesscatterplot3d,
+  author = {Uwe Ligges and Martin M{\"a}chler},
+  title = {Scatterplot3d - an R Package for Visualizing Multivariate Data},
+  journal = {Journal of Statistical Software},
+  year = {2003},
+  volume = {8},
+  pages = {1--20},
+  number = {11},
+  owner = {jay},
+  timestamp = {2009.12.30},
+  url = {http://www.jstatsoft.org}
+}
+
+ at BOOK{Magnus1999,
+  title = {Matrix Differential Calculus with Applications in Statistics and
+	Econometrics},
+  publisher = {Wiley},
+  year = {1999},
+  author = {Jan R. Magnus and Heinz Neudecker},
+  owner = {jay},
+  timestamp = {2009.12.30}
+}
+
+ at BOOK{Maindonald2003,
+  title = {Data Analysis and Graphics Using R},
+  publisher = {Cambridge University Press},
+  year = {2003},
+  author = {John Maindonald and John Braun},
+  owner = {jay},
+  timestamp = {2009.12.30}
+}
+
+ at MANUAL{Maindonalddaag,
+  title = {DAAG: Data Analysis And Graphics data and functions},
+  author = {John Maindonald and W. John Braun},
+  year = {2009},
+  note = {R package version 1.01},
+  owner = {jay},
+  timestamp = {2009.12.30},
+  url = {http://CRAN.R-project.org/package=DAAG}
+}
+
+ at BOOK{Mezrich2003,
+  title = {Bringing Down the House: The Inside Story of Six M.I.T. Students
+	Who Took Vegas for Millions},
+  publisher = {Free Press},
+  year = {2003},
+  author = {Mezrich, Ben},
+  owner = {jay},
+  timestamp = {2010.01.08}
+}
+
+ at MISC{Miller,
+  author = {Miller, Jeff},
+  title = {Earliest Known Uses of Some of the Words of Mathematics},
+  owner = {jay},
+  timestamp = {2009.12.31},
+  url = {http://jeff560.tripod.com/mathword.html}
+}
+
+ at BOOK{Neter1996,
+  title = {Applied Linear Regression Models},
+  publisher = {McGraw Hill},
+  year = {1996},
+  author = {Neter, John and Kutner, Michael H. and Nachtsheim, Christopher J.
+	and Wasserman, William},
+  edition = {Third},
+  owner = {jay},
+  timestamp = {2009.12.30}
+}
+
+ at MANUAL{rstatenv,
+  title = {R: A Language and Environment for Statistical Computing},
+  author = {{R Development Core Team}},
+  organization = {R Foundation for Statistical Computing},
+  address = {Vienna, Austria},
+  year = {2009},
+  note = {{ISBN} 3-900051-07-0},
+  owner = {jay},
+  timestamp = {2009.12.30},
+  url = {http://www.R-project.org}
+}
+
+ at BOOK{Rao1999,
+  title = {Linear Models: Least Squares and Alternatives},
+  publisher = {Springer},
+  year = {1999},
+  author = {Rao, C. Radhakrishna and Toutenburg, Helge},
+  owner = {jay},
+  timestamp = {2009.12.30}
+}
+
+ at BOOK{Resnick1999,
+  title = {A Probability Path},
+  publisher = {Birkhauser},
+  year = {1999},
+  author = {Sidney I. Resnick},
+  owner = {jay},
+  timestamp = {2009.12.30}
+}
+
+ at BOOK{Rizzo2008,
+  title = {Statistical Computing with R},
+  publisher = {Chapman \& Hall/CRC},
+  year = {2008},
+  author = {Rizzo, Maria L.},
+  owner = {jay},
+  timestamp = {2010.01.07}
+}
+
+ at BOOK{Robert2004,
+  title = {Monte Carlo Statistical Methods},
+  publisher = {Springer},
+  year = {2004},
+  author = {Robert, Christian P. and Casella, George},
+  owner = {jay},
+  timestamp = {2009.12.30}
+}
+
+ at BOOK{Ross1980,
+  title = {Elementary Calculus: The Theory of Calculus},
+  publisher = {Springer},
+  year = {1980},
+  author = {Kenneth A. Ross},
+  owner = {jay},
+  timestamp = {2009.12.30}
+}
+
+ at ARTICLE{Ruckdescheldistr,
+  author = {P. Ruckdeschel and M. Kohl and T. Stabla and F. Camphausen},
+  title = {S4 Classes for Distributions},
+  journal = {R News},
+  year = {2006},
+  volume = {6},
+  pages = {2--6},
+  number = {2},
+  month = {May},
+  file = {Rnews_2006-2.pdf:http\://CRAN.R-project.org/doc/Rnews/Rnews_2006-2.pdf:PDF},
+  language = {English},
+  owner = {jay},
+  timestamp = {2009.12.30},
+  url = {http://www.uni-bayreuth.de/departments/math/org/mathe7/DISTR/distr.pdf}
+}
+
+ at MANUAL{Sarkarlattice,
+  title = {lattice: Lattice Graphics},
+  author = {Deepayan Sarkar},
+  year = {2009},
+  note = {R package version 0.17-26},
+  owner = {jay},
+  timestamp = {2009.12.30},
+  url = {http://CRAN.R-project.org/package=lattice}
+}
+
+ at ARTICLE{Satterthwaite1946,
+  author = {Satterthwaite, F. E.},
+  title = {An Approximate Distribution of Estimates of Variance Components},
+  journal = {Biometrics Bulletin},
+  year = {1946},
+  volume = {2},
+  pages = {110--114},
+  owner = {jay},
+  timestamp = {2010.01.18}
+}
+
+ at ARTICLE{qcc,
+  author = {Luca Scrucca},
+  title = {qcc: an R package for quality control charting and statistical process
+	control},
+  journal = {R News},
+  year = {2004},
+  volume = {4/1},
+  pages = {11--17},
+  owner = {jay},
+  timestamp = {2009.12.30},
+  url = {http://CRAN.R-project.org/doc/Rnews/}
+}
+
+ at BOOK{Serfling1980,
+  title = {Approximation Theorems of Mathematical Statistics},
+  publisher = {Wiley},
+  year = {1980},
+  author = {Robert J. Serfling},
+  owner = {jay},
+  timestamp = {2009.12.30}
+}
+
+ at MANUAL{Snowteachingdemos,
+  title = {TeachingDemos: Demonstrations for teaching and learning},
+  author = {Greg Snow},
+  year = {2009},
+  note = {R package version 2.5},
+  owner = {jay},
+  timestamp = {2009.12.30},
+  url = {http://CRAN.R-project.org/package=TeachingDemos}
+}
+
+ at BOOK{Stewart2008,
+  title = {Calculus},
+  publisher = {Thomson Brooks/Cole},
+  year = {2008},
+  author = {James Stewart},
+  owner = {jay},
+  timestamp = {2009.12.30}
+}
+
+ at BOOK{Stigler1986,
+  title = {The History of Statistics: The Measurement of Uncertainty before
+	1900},
+  publisher = {Harvard University Press},
+  year = {1986},
+  author = {Stigler, Stephen M.},
+  owner = {jay},
+  timestamp = {2009.12.30}
+}
+
+ at BOOK{Strang1988,
+  title = {Linear Algebra and Its Applications},
+  publisher = {Harcourt},
+  year = {1988},
+  author = {Gilbert Strang},
+  owner = {jay},
+  timestamp = {2009.12.30}
+}
+
+ at BOOK{Tabachnick2006,
+  title = {Using Multivariate Statistics},
+  publisher = {Allyn and Bacon},
+  year = {2006},
+  author = {Tabachnick, Barbara G. and Fidell, Linda S.},
+  owner = {jay},
+  timestamp = {2009.12.30}
+}
+
+ at BOOK{Venables2002,
+  title = {Modern Applied Statistics with S},
+  publisher = {Springer},
+  year = {2002},
+  author = {W. N. Venables and B. D. Ripley},
+  address = {New York},
+  edition = {Fourth},
+  note = {ISBN 0-387-95457-0},
+  owner = {jay},
+  timestamp = {2009.12.30},
+  url = {http://www.stats.ox.ac.uk/pub/MASS4}
+}
+
+ at MANUAL{Venables2010,
+  title = {An Introduction to R},
+  author = {Venables, William N. and Smith, David M.},
+  year = {2010},
+  owner = {jay},
+  timestamp = {2009.12.30},
+  url = {http://www.r-project.org/Manuals}
+}
+
+ at MANUAL{usingr,
+  title = {UsingR: Data sets for the text "Using R for Introductory Statistics"},
+  author = {John Verzani},
+  note = {R package version 0.1-12},
+  owner = {jay},
+  timestamp = {2010.01.01},
+  url = {http://www.math.csi.cuny.edu/UsingR}
+}
+
+ at BOOK{Verzani2005,
+  title = {Using R for Introductory Statistics},
+  publisher = {CRC Press},
+  year = {2005},
+  author = {John Verzani},
+  owner = {jay},
+  timestamp = {2009.12.30},
+  url = {http://www.math.csi.cuny.edu/UsingR/}
+}
+
+ at ARTICLE{Welch1947,
+  author = {Welch, B. L.},
+  title = {The generalization of "Student's" problem when several different
+	population variances are involved},
+  journal = {Biometrika},
+  year = {1947},
+  volume = {34},
+  pages = {28--35},
+  owner = {jay},
+  timestamp = {2010.01.18}
+}
+
+ at BOOK{Wickam2009,
+  title = {ggplot2: elegant graphics for data analysis},
+  publisher = {Springer New York},
+  year = {2009},
+  author = {Hadley Wickham},
+  isbn = {978-0-387-98140-6},
+  owner = {jay},
+  timestamp = {2009.12.30},
+  url = {http://had.co.nz/ggplot2/book}
+}
+
+ at ARTICLE{Wickhamreshape,
+  author = {Hadley Wickham},
+  title = {Reshaping data with the reshape package},
+  journal = {Journal of Statistical Software},
+  year = {2007},
+  volume = {21},
+  number = {12},
+  owner = {jay},
+  timestamp = {2009.12.30},
+  url = {http://www.jstatsoft.org/v21/i12/paper}
+}
+
+ at MANUAL{rattle,
+  title = {rattle: A graphical user interface for data mining in R using GTK},
+  author = {Graham Williams},
+  year = {2009},
+  note = {R package version 2.5.12},
+  owner = {jay},
+  timestamp = {2009.12.30},
+  url = {http://CRAN.R-project.org/package=rattle}
+}
+
+ at MANUAL{aplpack,
+  title = {aplpack: Another Plot PACKage: stem.leaf, bagplot, faces, spin3R,
+	and some slider functions},
+  author = {Peter Wolf and Uni Bielefeld},
+  year = {2009},
+  note = {R package version 1.2.2},
+  owner = {jay},
+  timestamp = {2009.12.30},
+  url = {http://CRAN.R-project.org/package=aplpack}
+}
+
+ at ARTICLE{Zeileislmtest,
+  author = {Achim Zeileis and Torsten Hothorn},
+  title = {Diagnostic Checking in Regression Relationships},
+  journal = {R News},
+  year = {2002},
+  volume = {2},
+  pages = {7--10},
+  number = {3},
+  owner = {jay},
+  timestamp = {2009.12.30},
+  url = {http://CRAN.R-project.org/doc/Rnews/}
+}
+
+ at comment{jabref-meta: selector_publisher:}
+
+ at comment{jabref-meta: selector_author:}
+
+ at comment{jabref-meta: selector_journal:}
+
+ at comment{jabref-meta: selector_keywords:}
+

Modified: www/book/download/IPSUR.lyx
===================================================================
--- www/book/download/IPSUR.lyx	2010-01-20 13:22:27 UTC (rev 151)
+++ www/book/download/IPSUR.lyx	2010-01-21 04:52:46 UTC (rev 152)
@@ -63,10 +63,15 @@
 
 
 %%  Sweave specific commands
-% make the input blue
-\DefineVerbatimEnvironment{Sinput}{Verbatim}{fontshape=sl, formatcom=\color{red}}
-% make the output red
-\DefineVerbatimEnvironment{Soutput}{Verbatim}{formatcom=\color{blue}}
+% make the input blue, output red
+%\DefineVerbatimEnvironment{Soutput}{Verbatim}{formatcom=\color{blue}}
+%\DefineVerbatimEnvironment{Sinput}{Verbatim}{fontshape=sl, formatcom=\color{red}}
+% make the output black
+\DefineVerbatimEnvironment{Soutput}{Verbatim}{formatcom=\color{black}}
+\DefineVerbatimEnvironment{Sinput}{Verbatim}{fontshape=sl, formatcom=\color{black}}
+
+
+
 % get rid of extra Sweave space
 \fvset{listparameters={\setlength{\topsep}{0pt}}}
 \renewenvironment{Schunk}{\vspace{\topsep}}{\vspace{\topsep}}  
@@ -116,7 +121,7 @@
 \pdf_colorlinks true
 \pdf_backref page
 \pdf_pdfusetitle true
-\pdf_quoted_options "linkcolor=blue,  citecolor=black, urlcolor=blue"
+\pdf_quoted_options "linkcolor=black,  citecolor=black, urlcolor=black"
 \papersize a4paper
 \use_geometry true
 \use_amsmath 1
@@ -396,7 +401,7 @@
 \begin_inset Newline newline
 \end_inset
 
-options(width = 70)
+options(width = 75)
 \begin_inset Newline newline
 \end_inset
 
@@ -1131,6 +1136,31 @@
  no Front-Cover Texts, and no Back-Cover Texts.
  A copy of the license is included in the section entitled ``GNU Free Documentat
 ion License''.
+\end_layout
+
+\begin_layout Standard
+\noindent
+\begin_inset VSpace bigskip
+\end_inset
+
+
+\end_layout
+
+\begin_layout Standard
+\noindent
+Timestamp: 
+\begin_inset ERT
+status open
+
+\begin_layout Plain Layout
+
+
+\backslash
+today
+\end_layout
+
+\end_inset
+
  
 \begin_inset VSpace vfill
 \end_inset
@@ -1238,8 +1268,8 @@
 probability
 \emph default
 , which begins at the basics of sets and the equally likely model, journeys
- past discrete/continuous random variables and continues through to multivariate
- distributions.
+ past discrete/continuous random variables, and continues through to multivariat
+e distributions.
  The chapter on sampling distributions paves the way to the third part,
  which is 
 \emph on
@@ -1259,7 +1289,7 @@
 s Distributions.
  I mention selected facts from Multivariate Distributions in passing, and
  discuss the meaty parts of Sampling Distributions before moving right along
- to Estimation (which is another one I dwell on considerably).
+ to Estimation (which is another chapter I dwell on considerably).
  Hypothesis Testing goes faster after all of the previous work, and by that
  time the end of the semester is in sight.
  I normally choose one or two final chapters (sometimes three) from the
@@ -1273,7 +1303,7 @@
  For instance, I normally do not highlight the intricacies of measure theory
  or integrability conditions when speaking to the class.
  Moreover, I often stray from the matrix approach to multiple linear regression
- bacause many of my students have not yet been formally trained in linear
+ because many of my students have not yet been formally trained in linear
  algebra.
  That being said, it is important to me for the students to hold something
  in their hands which acknowledges the world of mathematics and statistics
@@ -1283,10 +1313,10 @@
 \end_layout
 
 \begin_layout Standard
-This document's ultimate goal is to be a more or less self contained, essentiall
-y complete, correct, introductory textbook.
+The vision for this document is a more or less self contained, essentially
+ complete, correct, introductory textbook.
  There should be plenty of exercises for the student, with full solutions
- for some and no solutions for others (so that the instructor may assign
+ for some, and no solutions for others (so that the instructor may assign
  them for grading).
  By 
 \begin_inset listings
@@ -1477,7 +1507,7 @@
 \end_inset
 
 .
- The people at the party are probability and statistics; the handshake is
+ The people at the party are Probability and Statistics; the handshake is
  
 \family sans
 R
@@ -1500,8 +1530,8 @@
 
 \begin_layout Standard
 Despite any misgivings: here it is, warts and all.
- I humbly invite said individuals to take this book, with the GNU-FDL in
- hand, and make it better.
+ I humbly invite said individuals to take this book, with the GNU Free Documenta
+tion License (GNU-FDL) in hand, and make it better.
  In that spirit there are at least a few ways in my view in which this book
  could be improved.
 \end_layout
@@ -1511,7 +1541,8 @@
 \begin_inset space ~
 \end_inset
 
-data: the data analyzed in this book are almost entirely from the 
+data.
+ The data analyzed in this book are almost entirely from the 
 \begin_inset listings
 lstparams "showstringspaces=false"
 inline true
@@ -1528,7 +1559,7 @@
 \family sans
 R
 \family default
-, and here is why: 
+, and here is why:
 \end_layout
 
 \begin_deeper
@@ -1552,7 +1583,7 @@
 \begin_layout Standard
 I made no attempt to choose data sets that would be interesting to the students;
  rather, data were chosen for their potential to convey a statistical point.
- Many of the datasets are decades old or more (for instance, the data used
+ Many of the data sets are decades old or more (for instance, the data used
  to introduce simple linear regression are the speeds and stopping distances
  of cars in the 1920's).
 \end_layout
@@ -1578,10 +1609,11 @@
 \begin_inset space ~
 \end_inset
 
-proofs: for the sake of completeness (I understand that some people would
- not consider more proofs to be improvement).
- Many proofs have been skipped entirely, and am not aware of any rhyme or
- reason to the current omissions.
+proofs.
+ I would like to include more proofs for the sake of completeness (I understand
+ that some people would not consider more proofs to be improvement).
+ Many proofs have been skipped entirely, and I am not aware of any rhyme
+ or reason to the current omissions.
  I will add more when I get a chance.
  
 \end_layout
@@ -1775,7 +1807,7 @@
 .
  There are transparent copies (nonproprietary text files) and opaque copies
  (everything else).
- See the GNU Free Documentation License (GNU-FDL) in Appendix 
+ See the GNU-FDL in Appendix 
 \begin_inset CommandInset ref
 LatexCommand ref
 reference "cha:GNU-Free-Documentation"
@@ -2758,7 +2790,7 @@
 \end_layout
 
 \begin_layout Standard
-The common folklore is that probability has been around for millenia but
+The common folklore is that probability has been around for millennia but
  did not gain the attention of mathematicians until approximately 1654 when
  the Chevalier de Mere had a question regarding the fair division of a game's
  payoff to the two players, if the game had to end prematurely.
@@ -3198,7 +3230,7 @@
 
 
 \color inherit
- will (on most operating systems) open a window contaning a huge list of
+ will (on most operating systems) open a window containing a huge list of
  available packages; simply choose one or more to install.
 \end_layout
 
@@ -3616,7 +3648,7 @@
 \family sans
 R
 \family default
-WinEdt is nevetheless a very fine choice if you already own WinEdt or are
[TRUNCATED]

To get the complete diff run:
    svnlook diff /svnroot/ipsur -r 152


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